Browse Element(s) Details


Os.55555.1.S1_at

Description gb:AK108306.1
DB_XREF= gi:32993515
TID=Os.55555.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-F06, full insert sequence.
FL= gb:AK108306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4445011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44410OsAffx.13341.1.S1_at11/113+24949062..24949907hypothetical protein
LOC_Os03g44420Os.14365.1.S1_at11/113+24950778..24955159Cell division protein ftsZ, putative, expressed
LOC_Os03g44430Os.47974.1.A1_at11/113+24955821..24957685expressed protein
LOC_Os03g44440Os.52782.1.S1_at4/113+24958105..24961677Cyclic nucleotide-gated ion channel 9, putative, expressed
LOC_Os03g44450Os.55555.1.S1_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.55555.1.S1_x_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.5287.1.S1_at10/113+24963441..24964569expressed protein
LOC_Os03g44460OsAffx.32166.1218.S1_x_at3/113+24975872..24976942expressed protein
LOC_Os03g44470NANA3+24978534..24983551retrotransposon protein, putative, unclassified
LOC_Os03g44484Os.53782.1.S1_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484OsAffx.25537.1.S1_x_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484Os.25542.1.S1_at10/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55555.1.S1_at--800--4811Chr03:24963752..24963776 (25 bp)
GCTCTAGATCAGATGTAAGTTTACA
LOC_Os03g44450
Os.55555.1.S1_at--29--7051Chr03:24963738..24963762 (25 bp)
GTAAGTTTACAACATATGTCCTAAA
LOC_Os03g44450
Os.55555.1.S1_at--565--2071Chr03:24963727..24963751 (25 bp)
ACATATGTCCTAAAAGAGATCAGAT
LOC_Os03g44450
Os.55555.1.S1_at--775--1331Chr03:24963713..24963737 (25 bp)
AGAGATCAGATGTAAGTATCACTAG
LOC_Os03g44450
Os.55555.1.S1_at--848--2831Chr03:24963700..24963724 (25 bp)
AAGTATCACTAGATGCAAGATGCAC
LOC_Os03g44450
Os.55555.1.S1_at--674--5171Chr03:24963686..24963710 (25 bp)
GCAAGATGCACACCCAAAAGAGAAT
LOC_Os03g44450
Os.55555.1.S1_at--137--1371Chr03:24963668..24963692 (25 bp)
AGAGAATTGATGCACACACTTGTAC
LOC_Os03g44450
Os.55555.1.S1_at--158--5131Chr03:24963657..24963681 (25 bp)
GCACACACTTGTACAGTTTACCAGT
LOC_Os03g44450
Os.55555.1.S1_at--414--2111Chr03:24963645..24963669 (25 bp)
ACAGTTTACCAGTACCATTCACTAT
LOC_Os03g44450
Os.55555.1.S1_at--902--6971Chr03:24963634..24963658 (25 bp)
GTACCATTCACTATATTCCGATTCA
LOC_Os03g44450
Os.55555.1.S1_at--344--3591Chr03:24963630..24963654 (25 bp)
CATTCACTATATTCCGATTCACTCG
LOC_Os03g44450
Target Sequence 
GCTCTAGATCAGATGTAAGTTTACAACATATGTCCTAAAAGAGATCAGATGTAAGTATCACTAGATGCAAGATGCACACC
CAAAAGAGAATTGATGCACACACTTGTACAGTTTACCAGTACCATTCACTATATTCCGATTCACTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis