Browse Element(s) Details


OsAffx.32166.1218.S1_x_at

Description tigr:9634.m04872
TID=OsAffx.32166.1218
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1889011/11transposon protein, putative, unclassified
LOC_Os06g4990011/11hypothetical protein
LOC_Os10g3212410/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g499809/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g378109/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g391509/11hypothetical protein
LOC_Os12g124406/11hypothetical protein
LOC_Os04g327506/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g102706/11retrotransposon protein, putative, unclassified
LOC_Os03g241906/11retrotransposon protein, putative, unclassified
LOC_Os03g126005/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g343303/11hypothetical protein
LOC_Os10g030703/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g444603/11expressed protein
LOC_Os01g614902/11retrotransposon protein, putative, unclassified
LOC_Os10g206701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18850Os.22749.1.S1_at11/112+10999887..11004647prolyl oligopeptidase family protein, expressed
LOC_Os02g18860OsAffx.24312.1.S1_at11/112+11008117..11008963hypothetical protein
LOC_Os02g18870OsAffx.12107.1.S1_at11/112+11009375..11014978GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g18880OsAffx.12108.1.S1_at10/112+11015825..11018864Calcineurin B-like protein 4, putative, expressed
LOC_Os02g18890OsAffx.32166.1218.S1_x_at11/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18890Os.7307.3.S1_x_at2/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18900NANA2+11031487..11036664retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18910OsAffx.12110.1.S1_at10/112+11042928..11043707hypothetical protein
LOC_Os02g18920NANA2+11050815..11051625hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32166.1218.S1_x_at--551--75910Chr02:5392224..5392248 (25 bp)
GGGACTATTGGACAAGGAATCTATT
LOC_Os02g10270
OsAffx.32166.1218.S1_x_at--456--104313Chr03:6673848..6673872 (25 bp)
TTATGCTCCCTACATAATGAGGTTG
LOC_Os03g12600
OsAffx.32166.1218.S1_x_at--383--97717Chr03:6673917..6673941 (25 bp)
TAAGGAGTACAAGCCTCGTCTCCAA
LOC_Os03g12600
OsAffx.32166.1218.S1_x_at--666--100115Chr10:10120180..10120204 (25 bp)
TAGAGCTCCTCGTGTGCGCCAACCA
LOC_Os10g20670
OsAffx.32166.1218.S1_x_at--1079--41113Chr03:6674188..6674212 (25 bp)
CGCACCGATGTTGGCAACTTGAATA
LOC_Os03g12600
OsAffx.32166.1218.S1_x_at--1061--81913Chr03:6674200..6674224 (25 bp)
GGCAACTTGAATACTTCGGTGGGAA
LOC_Os03g12600
OsAffx.32166.1218.S1_x_at--543--28112Chr03:6674223..6674246 (24 bp)
AAGATTGCATACTAGGGTGGGTGTA
LOC_Os03g12600
OsAffx.32166.1218.S1_x_at--179--8776Chr12:23182086..23182110 (25 bp)
TGTATTGGATTCTCGCGTCCAAACC
LOC_Os12g37810
OsAffx.32166.1218.S1_x_at--563--10596Chr12:23182077..23182101 (25 bp)
TTCTCGCGTCCAAACCTTGGAGAGT
LOC_Os12g37810
OsAffx.32166.1218.S1_x_at--1122--8539Chr01:35903251..35903275 (25 bp)
TGGAGAGTACCCAAGCTTTTGTCTA
NONE
OsAffx.32166.1218.S1_x_at--675--99511Chr07:11373716..11373739 (24 bp)
TACCCAAGCTTTTGTCTATCATCGC
NONE
Target Sequence 
GGGACTATTGGACAAGGAATCTATTATGCTCCCTACATAATGAGGTTGATTCAAAGCAAGTTGGGACAAATTGGTCACAA
TTTAAAAGAACATAAGGAGTACAAGCCTCGTCTCCAACTCTCCTCCCCTAGAGCTCCTCGTGTGCGCCAACCAACTTTTG
ATCAAGGTGCAAGCTCAAGTGCAGCCCCTCCTCCTCCTCCTCATGGGTATGATCCAAGTGCGTTTTTCCATCCACAATAT
GCTTACTTTGGAATGCAACCCAACGAGTACTTCAACCCGGTACTTGGGGCTATTAATACCCTAAGTGAAAGCATTCAACG
CTTATCCACCGGGCATGAAGCATTACATGAGGATGTTCGTGGCTTGCGCACCGATGTTGGCAACTTGAATACTTCGGTGG
GAAGATTGCATACTAGGGTGGGTGTATTGGATTCTCGCGTCCAAACCTTGGAGAGTACCCAAGCTTTTGTCTATCATCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32166.1218.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis