Browse Element(s) Details


OsAffx.12107.1.S1_at

Description tigr:9630.m01790
TID=OsAffx.12107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to the GDSL family of lipolytic enzymes
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1887011/11GDSL-motif lipase/hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18830Os.9478.1.S1_at10/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18830OsAffx.12023.1.S1_at1/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18840Os.17022.1.S1_at11/112+10994249..10997612phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os02g18850Os.22749.1.S1_at11/112+10999887..11004647prolyl oligopeptidase family protein, expressed
LOC_Os02g18860OsAffx.24312.1.S1_at11/112+11008117..11008963hypothetical protein
LOC_Os02g18870OsAffx.12107.1.S1_at11/112+11009375..11014978GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g18880OsAffx.12108.1.S1_at10/112+11015825..11018864Calcineurin B-like protein 4, putative, expressed
LOC_Os02g18890OsAffx.32166.1218.S1_x_at11/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18890Os.7307.3.S1_x_at2/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18900NANA2+11031487..11036664retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12107.1.S1_at--343--8071Chr02:11012890..11012914 (25 bp)
GGAGCAACGACTTCATCCACTATTA
LOC_Os02g18870
OsAffx.12107.1.S1_at--148--151Chr02:11012911..11012935 (25 bp)
ATTACCTGCGCAATGTGTCTGGCGT
LOC_Os02g18870
OsAffx.12107.1.S1_at--406--1291Chr02:11012938..11012962 (25 bp)
AGATGCGTTACCTCCCATGGGAGTT
LOC_Os02g18870
OsAffx.12107.1.S1_at--640--6071Chr02:11012958..11012982 (25 bp)
GAGTTCAACCAGCTTCTTGTCAATG
LOC_Os02g18870
OsAffx.12107.1.S1_at--1103--751Chr02:11014558..11014582 (25 bp)
ATGTCTAGTGAATTCATCCGCCAGC
LOC_Os02g18870
OsAffx.12107.1.S1_at--378--1511Chr02:11014580..11014604 (25 bp)
AGCACCCAGGCTCTATGATCAGTTA
LOC_Os02g18870
OsAffx.12107.1.S1_at--389--8991Chr02:11014637..11014659 (23 bp)
TGAAGAATCGTGACCGCTACGGTTT
LOC_Os02g18870
OsAffx.12107.1.S1_at--643--9931Chr02:11014745..11014766 (22 bp)
TACGGTTTTCTGACCACCACTGATG
LOC_Os02g18870
OsAffx.12107.1.S1_at--152--7431Chr02:11014806..11014830 (25 bp)
GTGTTCTTCCACAGATGGCGTGCAG
LOC_Os02g18870
OsAffx.12107.1.S1_at--697--611Chr02:11014875..11014899 (25 bp)
ATGCTGTGAACCGAATCCTGGCTGA
LOC_Os02g18870
OsAffx.12107.1.S1_at--810--4951Chr02:11014918..11014942 (25 bp)
GCATACCAAGATGTGCTATCCTGTG
LOC_Os02g18870
Target Sequence 
GGAGCAACGACTTCATCCACTATTACCTGCGCAATGTGTCTGGCGTCCAGATGCGTTACCTCCCATGGGAGTTCAACCAG
CTTCTTGTCAATGCAATGAGGCAGGAAATCAAGAATTTGTACAATATCAATGTTCGGAAGGTCGTCATGATGGGCCTCCC
TCCTGTTGGCTGCGCACCTCACTTTCTCTGGGAGTACGGCAGTCAAGACGGGGAATGCATCGACTACATCAATAACGTCG
TGATTCAGTTCAACTATGCCCTGAGATACATGTCTAGTGAATTCATCCGCCAGCACCCAGGCTCTATGATCAGTTACTGT
GATACTTTTGAGGGGTCTGTGGACATACTGAAGAATCGTGACCGCTACGGTTTTCTGACCACCACTGATGCCTGCTGTGG
GCTGGGGAAGTATGGGGGCCTGTTCATGTGTGTTCTTCCACAGATGGCGTGCAGCGACGCGTCGAGCCATGTCTGGTGGG
ACGAGTTCCACCCCACGGATGCTGTGAACCGAATCCTGGCTGATAATGTGTGGTCTGGTGAGCATACCAAGATGTGCTAT
CCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis