Browse Element(s) Details


Os.17022.1.S1_at

Description gb:AK065628.1
DB_XREF= gi:32975646
TID=Os.17022.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027K22, full insert sequence.
FL= gb:AK065628.1 gb:AK061705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1884011/11phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18820Os.16225.1.S1_at11/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18820Os.23650.1.A1_at9/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18830Os.9478.1.S1_at10/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18830OsAffx.12023.1.S1_at1/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18840Os.17022.1.S1_at11/112+10994249..10997612phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os02g18850Os.22749.1.S1_at11/112+10999887..11004647prolyl oligopeptidase family protein, expressed
LOC_Os02g18860OsAffx.24312.1.S1_at11/112+11008117..11008963hypothetical protein
LOC_Os02g18870OsAffx.12107.1.S1_at11/112+11009375..11014978GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g18880OsAffx.12108.1.S1_at10/112+11015825..11018864Calcineurin B-like protein 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17022.1.S1_at--163--6071Chr02:10994792..10994816 (25 bp)
GAGTTCTGCGCATCAGCACAATGCT
LOC_Os02g18840
Os.17022.1.S1_at--951--6351Chr02:10994655..10994679 (25 bp)
GATGCCATCCTTCCAGGAACTAGTG
LOC_Os02g18840
Os.17022.1.S1_at--795--451Chr02:10994610..10994634 (25 bp)
ATCTCGGAGATCATGGACTTTCACC
LOC_Os02g18840
Os.17022.1.S1_at--292--5691Chr02:10994595..10994619 (25 bp)
GACTTTCACCTTGATAAGCTTGCTG
LOC_Os02g18840
Os.17022.1.S1_at--1017--4031Chr02:10994541..10994565 (25 bp)
CGAGTTACTCGAATTGTGCCCGGTT
LOC_Os02g18840
Os.17022.1.S1_at--271--10811Chr02:10994528..10994552 (25 bp)
TTGTGCCCGGTTGTAAGTATGTATC
LOC_Os02g18840
Os.17022.1.S1_at--627--8391Chr02:10994477..10994501 (25 bp)
TGGCCGTTGAACTCATTACCGTGGA
LOC_Os02g18840
Os.17022.1.S1_at--1060--7931Chr02:10994432..10994456 (25 bp)
GGATCATCCACTTTTTTACCTGTAC
LOC_Os02g18840
Os.17022.1.S1_at--596--5731Chr02:10994397..10994421 (25 bp)
GACTGTAGTTGCATCGAGTGTTCTT
LOC_Os02g18840
Os.17022.1.S1_at--791--6111Chr02:10994382..10994406 (25 bp)
GAGTGTTCTTTCTGCTTGGTAATTT
LOC_Os02g18840
Os.17022.1.S1_at--405--10871Chr02:10994294..10994318 (25 bp)
TTGGCATTGCCAAATCCTGAGAACA
LOC_Os02g18840
Target Sequence 
GAGTTCTGCGCATCAGCACAATGCTTTTGAAGAAGGGGGCAGAGAGAGGCCTAACGCCTTATGACANTCGGCAGCATCTT
ATGCAGGCAAACANGTCAAAAAAGAATCTGAAATCGAGGCCATCATAGAGGAAGCAGAGGATGCCATCCTTCCAGGAACT
AGTGAGGAGACANTTCTTGGAGACCATCTCGGAGATCATGGACTTTCACCTTGATAAGCTTGCTGTGAAGTTAAAGAAGT
TCTGAATAACTGATCGAGTTACTCGAATTGTGCCCGGTTGTAAGTATGTATCGTAGTCACTAAATGNAATAACGAGTTTG
GCCGTTGAACTCATTACCGTGGAACATTTTGTGAATATAACAAGGATCATCCACTTTTTTACCTGTACTTGTAATGTAGA
CTGTAGTTGCATCGAGTGTTCTTTCTGCTTGGTAATTTCAGCAAAACCTAGCACCTGAGAAGCTTGTTTGGATCATTGTC
AATGTAAACCTGTTTAAAGTGTTGGCATTGCCAAATCCTGAGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis