Browse Element(s) Details


OsAffx.12108.1.S1_at

Description tigr:9630.m01791
TID=OsAffx.12108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1888010/11Calcineurin B-like protein 4, putative, expressed
LOC_Os03g335701/11Calcineurin B-like protein 8, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18830Os.9478.1.S1_at10/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18830OsAffx.12023.1.S1_at1/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18840Os.17022.1.S1_at11/112+10994249..10997612phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os02g18850Os.22749.1.S1_at11/112+10999887..11004647prolyl oligopeptidase family protein, expressed
LOC_Os02g18860OsAffx.24312.1.S1_at11/112+11008117..11008963hypothetical protein
LOC_Os02g18870OsAffx.12107.1.S1_at11/112+11009375..11014978GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g18880OsAffx.12108.1.S1_at10/112+11015825..11018864Calcineurin B-like protein 4, putative, expressed
LOC_Os02g18890OsAffx.32166.1218.S1_x_at11/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18890Os.7307.3.S1_x_at2/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18900NANA2+11031487..11036664retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18910OsAffx.12110.1.S1_at10/112+11042928..11043707hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006499biological_processN-terminal protein myristoylation
GO:0006950biological_processresponse to stress
GO:0006970biological_processresponse to osmotic stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0019722biological_processcalcium-mediated signaling
GO:0030007biological_processpotassium ion homeostasis
GO:0042539biological_processhypotonic salinity response
GO:0005886cellular_componentplasma membrane
GO:0005955cellular_componentcalcineurin complex
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12108.1.S1_at--657--6391Chr02:11017267..11017388 (25 bp)
GATCGGGTCGAACAATTCCAGATGT
LOC_Os02g18880
OsAffx.12108.1.S1_at--74--5731Chr02:11017236..11017260 (25 bp)
GACTGACAGAGTCTTCTCATTTCAA
LOC_Os02g18880
OsAffx.12108.1.S1_at--36--5971Chr03:19131853..19132221 (25 bp)
GAGAAGATTGCCTTATTCCCTCTTG
LOC_Os03g33570
OsAffx.12108.1.S1_at--846--10191Chr02:11016750..11016774 (25 bp)
TATTCCCTCTTGCAGTTGCATTTAG
LOC_Os02g18880
OsAffx.12108.1.S1_at--750--2971Chr02:11016246..11016270 (25 bp)
AATGGTGCTCGCCATTCTGAATGAA
LOC_Os02g18880
OsAffx.12108.1.S1_at--411--5271Chr02:11016228..11016252 (25 bp)
GAATGAATCAGATCTGCTCCTTTCT
LOC_Os02g18880
OsAffx.12108.1.S1_at--538--9251Chr02:11016211..11016235 (25 bp)
TCCTTTCTGATGACGCTGTTGAGCA
LOC_Os02g18880
OsAffx.12108.1.S1_at--756--8911Chr02:11016107..11016216 (25 bp)
TGAGCAGATTGTGGATCAGACGTTC
LOC_Os02g18880
OsAffx.12108.1.S1_at--1057--4171Chr02:11016047..11016071 (25 bp)
CCCGGATGAATGGAAGGCGTTCGCA
LOC_Os02g18880
OsAffx.12108.1.S1_at--850--6691Chr02:11016029..11016053 (25 bp)
GTTCGCAAGTAAAAACCCTGCTTTG
LOC_Os02g18880
OsAffx.12108.1.S1_at--851--9811Chr02:11015859..11015883 (25 bp)
TAACAATGGCATTCCCCAGTTTTGT
LOC_Os02g18880
Target Sequence 
GATCGGGTCGAACAATTCCAGATGTGTGAAAGACTGACAGAGTCTTCTCATTTCAAGCAGATATTTGATCTCTTTGATCT
TAAGCGCAATGGTGTTATTGATTTCGGGGAGTTTGTTCGATCCCTCAACATTTTTCACCCGGAAACGCCTTTGGCAGAGA
AGATTGCCTTATTCCCTCTTGCAGTTGCATTTAGATTGTATGATCTGAGAGGAACTGGATACATCGAACGTGAAGAGTTG
TACGAAATGGTGCTCGCCATTCTGAATGAATCAGATCTGCTCCTTTCTGATGACGCTGTTGAGCAGATTGTGGATCAGAC
GTTCAAGCAAGCAGACTTAAACAGCGACGGGAAGATCGACCCGGATGAATGGAAGGCGTTCGCAAGTAAAAACCCTGCTT
TGCTGAAGAACATGACCCTCCCATACCTGAAGGACATAACAATGGCATTCCCCAGTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis