Browse Element(s) Details


Os.9478.1.S1_at

Description gb:AK101872.1
DB_XREF= gi:32987081
TID=Os.9478.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9478 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070F10, full insert sequence.
FL= gb:AK101872.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1883010/11ribosome biogenesis protein NEP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18810Os.54169.1.S1_at11/112+10960659..10968044pentatricopeptide, putative, expressed
LOC_Os02g18820Os.16225.1.S1_at11/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18820Os.23650.1.A1_at9/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18830Os.9478.1.S1_at10/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18830OsAffx.12023.1.S1_at1/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18840Os.17022.1.S1_at11/112+10994249..10997612phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os02g18850Os.22749.1.S1_at11/112+10999887..11004647prolyl oligopeptidase family protein, expressed
LOC_Os02g18860OsAffx.24312.1.S1_at11/112+11008117..11008963hypothetical protein
LOC_Os02g18870OsAffx.12107.1.S1_at11/112+11009375..11014978GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g18880OsAffx.12108.1.S1_at10/112+11015825..11018864Calcineurin B-like protein 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9478.1.S1_at--152--7111Chr02:10992146..10992170 (25 bp)
GTCATTAAAAATCCAGTCACCCGCT
LOC_Os02g18830
Os.9478.1.S1_at--178--1811Chr02:10992164..10992188 (25 bp)
ACCCGCTATCTACCAGTTGGAGCAA
LOC_Os02g18830
Os.9478.1.S1_at--476--2231Chr02:10992651..10992675 (25 bp)
AAATCCAGTGACGATGTACCCCTTG
LOC_Os02g18830
Os.9478.1.S1_at--941--3291Chr02:10993390..10993410 (21 bp)
CAAATTTGCAATTACCCTCTCAGTG
LOC_Os02g18830
Os.9478.1.S1_at--281--9111Chr02:10993409..10993433 (25 bp)
TGCTGCCTGCTGTTTGAATCGAATA
LOC_Os02g18830
Os.9478.1.S1_at--365--6631Chr02:10993514..10993538 (25 bp)
GTTGTGTACTCGCTAGCTAATGCAA
LOC_Os02g18830
Os.9478.1.S1_at--573--4831Chr02:10993529..10993553 (25 bp)
GCTAATGCAATTTTGCGGTCTCCTC
LOC_Os02g18830
Os.9478.1.S1_at--406--4291Chr02:10993550..10993574 (25 bp)
CCTCCCATGCTGAGTGTGTACTGTA
LOC_Os02g18830
Os.9478.1.S1_at--160--10131Chr02:10993670..10993694 (25 bp)
TATGATTACCACCAGCCTTGAGCTA
LOC_Os02g18830
Os.9478.1.S1_at--512--10271Chr02:10993728..10993752 (25 bp)
TTTGCCCCAAAATTTTACGCTGAGC
LOC_Os02g18830
Os.9478.1.S1_at--761--4751Chr02:10993746..10993770 (25 bp)
GCTGAGCTGAGATTTACCCGCATTA
NONE
Target Sequence 
GTCATTAAAAATCCAGTCACCCGCTATCTACCAGTTGGAGCAAAGAAGATTGGTCTTTCATATAGTGCTGAGAAGTCAGT
CAATTTGTTTGACTATGTTGCCAAATCCAGTGACGATGTACCCCTTGTGTTTGTGGTAGGTGCTATGGCTCATGGAAAGA
TTGACAACGAATACTCAGATGATTACATACAAATTTGCAATTACCCTCTCAGTGCTGCCTGCTGTTTGAATCGAATATGC
AGTGCTCTCGAGCAGAAGTGGAACATCCAGTGAAAGGAAATTTTGAAAACGAACACTGAAAAACATTATGTGAAATTGTT
GTGTACTCGCTAGCTAATGCAATTTTGCGGTCTCCTCCCATGCTGAGTGTGTACTGTATTCTGATTGTGGAGACTTGAAA
ACTCCGGTGGTAATAGTGTTAAAGTTCAATGTTTGTCGCAACAATATGTTACATCTTGAGGCATACTGNTGCTTATGATT
ACCACCAGCCTTGAGCTAGGNTGGTTGAAAACCGAACTGCAACGTTTGTCCTTTGCCCCAAAATTTTACGCTGAGCTGAG
ATTTACCCGCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis