Browse Element(s) Details


OsAffx.24312.1.S1_at

Description tigr:9630.m01789
TID=OsAffx.24312.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1886011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18820Os.16225.1.S1_at11/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18820Os.23650.1.A1_at9/112+10972767..10983602transducin family protein, putative, expressed
LOC_Os02g18830Os.9478.1.S1_at10/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18830OsAffx.12023.1.S1_at1/112+10990470..10993769ribosome biogenesis protein NEP1, putative, expressed
LOC_Os02g18840Os.17022.1.S1_at11/112+10994249..10997612phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os02g18850Os.22749.1.S1_at11/112+10999887..11004647prolyl oligopeptidase family protein, expressed
LOC_Os02g18860OsAffx.24312.1.S1_at11/112+11008117..11008963hypothetical protein
LOC_Os02g18870OsAffx.12107.1.S1_at11/112+11009375..11014978GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os02g18880OsAffx.12108.1.S1_at10/112+11015825..11018864Calcineurin B-like protein 4, putative, expressed
LOC_Os02g18890OsAffx.32166.1218.S1_x_at11/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18890Os.7307.3.S1_x_at2/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18900NANA2+11031487..11036664retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24312.1.S1_at--365--2091Chr02:11008148..11008172 (25 bp)
ACATCATGACCGCATATTATGGAGA
LOC_Os02g18860
OsAffx.24312.1.S1_at--186--6051Chr02:11008171..11008195 (25 bp)
GAGTTGTTGAAAACTGATCGCCAGG
LOC_Os02g18860
OsAffx.24312.1.S1_at--68--6391Chr02:11008186..11008210 (25 bp)
GATCGCCAGGTGTTTGAGACTCAAC
LOC_Os02g18860
OsAffx.24312.1.S1_at--730--2331Chr02:11008227..11008251 (25 bp)
AAAGATGGCTTCGTACTACCGTAAG
LOC_Os02g18860
OsAffx.24312.1.S1_at--1134--1752Chr02:11008244..11008268 (25 bp)
ACCGTAAGACGAGGCAAGGCATCAT
LOC_Os02g18860
OsAffx.24312.1.S1_at--314--2251Chr02:11008279..11008303 (25 bp)
AAATTCATGTTACCCATCCATGCAA
LOC_Os02g18860
OsAffx.24312.1.S1_at--269--5251Chr02:11008795..11008819 (25 bp)
GAATCAGCTCATGTCTGGTGCTCCT
LOC_Os02g18860
OsAffx.24312.1.S1_at--1050--7771Chr02:11008811..11008835 (25 bp)
GGTGCTCCTCTAAAAGACATTGACA
LOC_Os02g18860
OsAffx.24312.1.S1_at--763--7271Chr02:11008842..11008866 (25 bp)
GTCCACGGGCTGACTCAACAAGATT
LOC_Os02g18860
OsAffx.24312.1.S1_at--980--8551Chr02:11008866..11008890 (25 bp)
TGGATAAACTGCCTCCTAAACCGTT
LOC_Os02g18860
OsAffx.24312.1.S1_at--794--9811Chr02:11008882..11008906 (25 bp)
TAAACCGTTCAAGGAGTCAATTTGT
LOC_Os02g18860
Target Sequence 
ACATCATGACCGCATATTATGGAGAGTTGTTGAAAACTGATCGCCAGGTGTTTGAGACTCAACTTGAAGAATTGCTTCAA
AAGATGGCTTCGTACTACCGTAAGACGAGGCAAGGCATCATCAAGCAACAAAAATTCATGTTACCCATCCATGCAAAATC
AAAGAATCAGCTCATGTCTGGTGCTCCTCTAAAAGACATTGACATGTGGGGTCCACGGGCTGACTCAACAAGATTGGATA
AACTGCCTCCTAAACCGTTCAAGGAGTCAATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis