Browse Element(s) Details


OsAffx.12110.1.S1_at

Description tigr:9630.m01797
TID=OsAffx.12110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1891010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18880OsAffx.12108.1.S1_at10/112+11015825..11018864Calcineurin B-like protein 4, putative, expressed
LOC_Os02g18890OsAffx.32166.1218.S1_x_at11/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18890Os.7307.3.S1_x_at2/112+11026915..11029881transposon protein, putative, unclassified
LOC_Os02g18900NANA2+11031487..11036664retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18910OsAffx.12110.1.S1_at10/112+11042928..11043707hypothetical protein
LOC_Os02g18920NANA2+11050815..11051625hypothetical protein
LOC_Os02g18930OsAffx.24314.1.S1_at11/112+11057582..11059929Calcineurin B-like protein 4, putative
LOC_Os02g18940Os.19378.1.S1_at11/112+11066131..11067378expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12110.1.S1_at--82--5611Chr02:11042962..11042986 (25 bp)
GACAAATCCAATATGGTGCCTACGG
LOC_Os02g18910
OsAffx.12110.1.S1_at--393--3031Chr02:11042966..11042990 (25 bp)
AATCCAATATGGTGCCTACGGAGGC
LOC_Os02g18910
OsAffx.12110.1.S1_at--521--9532Chr10:4779581..4779678 (25 bp)
TCTAGCGCCATCTCTAATCACGATG
NONE
OsAffx.12110.1.S1_at--772--9991Chr02:11043005..11043029 (25 bp)
TAGCGCCATCTCTAATCACGATGAG
LOC_Os02g18910
OsAffx.12110.1.S1_at--1011--4551Chr02:11043007..11043031 (25 bp)
GCGCCATCTCTAATCACGATGAGTT
LOC_Os02g18910
OsAffx.12110.1.S1_at--935--3531Chr02:11043011..11043035 (25 bp)
CATCTCTAATCACGATGAGTTCGTA
LOC_Os02g18910
OsAffx.12110.1.S1_at--766--3211Chr02:11043089..11043602 (25 bp)
CAAGTCGGCGACAGCTAGATCGTTC
LOC_Os02g18910
OsAffx.12110.1.S1_at--1162--7171NONE
GTCGGCGACAGCTAGATCGTTCGAA
NONE
OsAffx.12110.1.S1_at--27--4611Chr02:11043096..11043609 (25 bp)
GCGACAGCTAGATCGTTCGAAAAAA
LOC_Os02g18910
OsAffx.12110.1.S1_at--565--7131Chr02:11043612..11043636 (25 bp)
GTCATCAACGGTCTGATCGTTCGAA
LOC_Os02g18910
OsAffx.12110.1.S1_at--86--9711Chr02:11043616..11043640 (25 bp)
TCAACGGTCTGATCGTTCGAAAAAA
LOC_Os02g18910
Target Sequence 
GACAAATCCAATATGGTGCCTACGGAGGCCGACAAGAGGGATCTAGCGCCATCTCTAATCACGATGAGTTCGTACTCGAG
AAGGAAGACTACCCTGTCGTCGACTACGTGTTGGTTATCTATGCCGCCAAGTCGGCGACAGCTAGATCGTTCGAAAAAAA
GGTCATCAACGGTCTGATCGTTCGAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis