Browse Element(s) Details


Os.5287.1.S1_at

Description gb:AU174326
DB_XREF= gi:13165529
DB_XREF=AU174326
CLONE=S4360
TID=Os.5287.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5287 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4445010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44410OsAffx.13341.1.S1_at11/113+24949062..24949907hypothetical protein
LOC_Os03g44420Os.14365.1.S1_at11/113+24950778..24955159Cell division protein ftsZ, putative, expressed
LOC_Os03g44430Os.47974.1.A1_at11/113+24955821..24957685expressed protein
LOC_Os03g44440Os.52782.1.S1_at4/113+24958105..24961677Cyclic nucleotide-gated ion channel 9, putative, expressed
LOC_Os03g44450Os.55555.1.S1_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.55555.1.S1_x_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.5287.1.S1_at10/113+24963441..24964569expressed protein
LOC_Os03g44460OsAffx.32166.1218.S1_x_at3/113+24975872..24976942expressed protein
LOC_Os03g44470NANA3+24978534..24983551retrotransposon protein, putative, unclassified
LOC_Os03g44484Os.53782.1.S1_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484OsAffx.25537.1.S1_x_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484Os.25542.1.S1_at10/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5287.1.S1_at--708--931Chr03:24963558..24963582 (25 bp)
AGGAATATGCAAGGGCATCGCTGTT
LOC_Os03g44450
Os.5287.1.S1_at--911--2331NONE
AAAGACCTCGAGGATGTAGATTGGT
NONE
Os.5287.1.S1_at--1109--5811Chr03:24963521..24963545 (25 bp)
GACCTCGAGGATGTAGATTGGTTAA
LOC_Os03g44450
Os.5287.1.S1_at--26--4351Chr03:24963495..24963519 (25 bp)
CCATGGTTTGGCAAAAGCCTCATAC
LOC_Os03g44450
Os.5287.1.S1_at--218--8571Chr03:24963492..24963516 (25 bp)
TGGTTTGGCAAAAGCCTCATACCAA
LOC_Os03g44450
Os.5287.1.S1_at--847--8491Chr03:24963487..24963511 (25 bp)
TGGCAAAAGCCTCATACCAAAGTTT
LOC_Os03g44450
Os.5287.1.S1_at--533--2411Chr03:24963483..24963507 (25 bp)
AAAAGCCTCATACCAAAGTTTACAG
LOC_Os03g44450
Os.5287.1.S1_at--67--2671Chr03:24963481..24963505 (25 bp)
AAGCCTCATACCAAAGTTTACAGTG
LOC_Os03g44450
Os.5287.1.S1_at--734--4431Chr03:24963479..24963503 (25 bp)
GCCTCATACCAAAGTTTACAGTGAT
LOC_Os03g44450
Os.5287.1.S1_at--908--3551Chr03:24963475..24963499 (25 bp)
CATACCAAAGTTTACAGTGATCCTT
LOC_Os03g44450
Os.5287.1.S1_at--770--4351Chr03:24963471..24963495 (25 bp)
CCAAAGTTTACAGTGATCCTTTCAA
LOC_Os03g44450
Target Sequence 
AGGAATATGCAAGGGCATCGCTGTTGCATTANAAAAAGACCTCGAGGATGTAGATTGGTTAANCCATGGTTTGGCAAAAG
CCTCATACCAAAGTTTACAGTGATCCTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis