Browse Element(s) Details


OsAffx.13341.1.S1_at

Description tigr:9631.m04287
TID=OsAffx.13341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4441011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44390NANA3+24926302..24932187retrotransposon protein, putative, unclassified
LOC_Os03g44400Os.28943.1.S1_x_at1/113+24932818..24935988retrotransposon protein, putative, unclassified
LOC_Os03g44410OsAffx.13341.1.S1_at11/113+24949062..24949907hypothetical protein
LOC_Os03g44420Os.14365.1.S1_at11/113+24950778..24955159Cell division protein ftsZ, putative, expressed
LOC_Os03g44430Os.47974.1.A1_at11/113+24955821..24957685expressed protein
LOC_Os03g44440Os.52782.1.S1_at4/113+24958105..24961677Cyclic nucleotide-gated ion channel 9, putative, expressed
LOC_Os03g44450Os.55555.1.S1_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.55555.1.S1_x_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.5287.1.S1_at10/113+24963441..24964569expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13341.1.S1_at--977--8171Chr03:24949106..24949130 (25 bp)
GGAAGATTCAAGCAAGGAGCACGTT
LOC_Os03g44410
OsAffx.13341.1.S1_at--42--2932Chr08:22978225..22978249 (24 bp)
AAGGAGCACGTTGGGATGCCACCGC
NONE
OsAffx.13341.1.S1_at--400--5931Chr03:24949122..24949146 (25 bp)
GAGCACGTTGGGATGCCACCGCCAT
LOC_Os03g44410
OsAffx.13341.1.S1_at--563--1891Chr03:24949126..24949150 (25 bp)
ACGTTGGGATGCCACCGCCATCGCT
LOC_Os03g44410
OsAffx.13341.1.S1_at--40--3551Chr03:24949144..24949168 (25 bp)
CATCGCTCTGCTGCGCCGAGAAGAA
LOC_Os03g44410
OsAffx.13341.1.S1_at--213--9271Chr03:24949549..24949573 (25 bp)
TCCTCGAGGGCGTCGTTGCGCCGTT
LOC_Os03g44410
OsAffx.13341.1.S1_at--223--7171Chr03:24949605..24949629 (25 bp)
GTCTCCGAGGTGGTCGTTGGCTGGC
LOC_Os03g44410
OsAffx.13341.1.S1_at--120--7511Chr03:24949614..24949638 (25 bp)
GTGGTCGTTGGCTGGCGTCGCCATC
LOC_Os03g44410
OsAffx.13341.1.S1_at--1144--6151Chr03:24949664..24949688 (25 bp)
GAGGTTGCCGTCCACTACCGTCGTC
LOC_Os03g44410
OsAffx.13341.1.S1_at--521--9411Chr03:24949684..24949708 (25 bp)
TCGTCTCCGAGGTCAGCCCAAGCAG
LOC_Os03g44410
OsAffx.13341.1.S1_at--1042--9491Chr03:24949687..24949711 (25 bp)
TCTCCGAGGTCAGCCCAAGCAGTGG
LOC_Os03g44410
Target Sequence 
GGAAGATTCAAGCAAGGAGCACGTTGGGATGCCACCGCCATCGCTCTGCTGCGCCGAGAAGAAGATCCTCGAGGGCGTCG
TTGCGCCGTTGCCAGCCGTCGTCGGCGCCTCGCCAACCGTCGTCTCCGAGGTGGTCGTTGGCTGGCGTCGCCATCGTCAT
CGCCAGATCCGTCGCCAGCCGAGGTTGCCGTCCACTACCGTCGTCTCCGAGGTCAGCCCAAGCAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis