Browse Element(s) Details


Os.14365.1.S1_at

Description gb:AK100526.1
DB_XREF= gi:32985735
TID=Os.14365.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101A08, full insert sequence.
FL= gb:AK100526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4442011/11Cell division protein ftsZ, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44390NANA3+24926302..24932187retrotransposon protein, putative, unclassified
LOC_Os03g44400Os.28943.1.S1_x_at1/113+24932818..24935988retrotransposon protein, putative, unclassified
LOC_Os03g44410OsAffx.13341.1.S1_at11/113+24949062..24949907hypothetical protein
LOC_Os03g44420Os.14365.1.S1_at11/113+24950778..24955159Cell division protein ftsZ, putative, expressed
LOC_Os03g44430Os.47974.1.A1_at11/113+24955821..24957685expressed protein
LOC_Os03g44440Os.52782.1.S1_at4/113+24958105..24961677Cyclic nucleotide-gated ion channel 9, putative, expressed
LOC_Os03g44450Os.55555.1.S1_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.55555.1.S1_x_at11/113+24963441..24964569expressed protein
LOC_Os03g44450Os.5287.1.S1_at10/113+24963441..24964569expressed protein
LOC_Os03g44460OsAffx.32166.1218.S1_x_at3/113+24975872..24976942expressed protein
LOC_Os03g44470NANA3+24978534..24983551retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0010020biological_processchloroplast fission
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0005198molecular_functionstructural molecule activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14365.1.S1_at--937--5911Chr03:24954542..24954566 (25 bp)
GAGCATAACCTTGATTGCCACTGGC
LOC_Os03g44420
Os.14365.1.S1_at--882--10671Chr03:24954556..24954580 (25 bp)
TTGCCACTGGCTTCAAACGTCAAGA
LOC_Os03g44420
Os.14365.1.S1_at--865--4311Chr03:24954816..24954840 (25 bp)
CCTTGCCCAGTATCTATGCTTATCA
LOC_Os03g44420
Os.14365.1.S1_at--542--4891Chr03:24954833..24954857 (25 bp)
GCTTATCAGCATTCTCCTAGATCAG
LOC_Os03g44420
Os.14365.1.S1_at--284--411Chr03:24954853..24954877 (25 bp)
ATCAGTCGCCTCATGTAGGATACCA
LOC_Os03g44420
Os.14365.1.S1_at--570--6751Chr03:24954907..24954931 (25 bp)
GTTCAGTTTTGTTTACTCCCTTATG
LOC_Os03g44420
Os.14365.1.S1_at--628--5531Chr03:24954991..24955015 (25 bp)
GAAATCGTTTTATCCCAGTAGGTCA
LOC_Os03g44420
Os.14365.1.S1_at--987--251Chr03:24955024..24955048 (25 bp)
ATATGCCCCTACTCAAGTTGTGTTC
LOC_Os03g44420
Os.14365.1.S1_at--431--1251Chr03:24955039..24955063 (25 bp)
AGTTGTGTTCATCTCACGAGGCTTT
LOC_Os03g44420
Os.14365.1.S1_at--217--4871Chr03:24955059..24955083 (25 bp)
GCTTTTACTCGGTTGAGAGCCTGGA
LOC_Os03g44420
Os.14365.1.S1_at--939--6151Chr03:24955082..24955106 (25 bp)
GAGGTTCCTCTGTTTTATCGACATT
LOC_Os03g44420
Target Sequence 
GAGCATAACCTTGATTGCCACTGGCTTCAAACGTCAAGATGAACCAGAAGGTCGCACCACAAAGGGTGGCCAACAAACGC
AAGGAGACAATGGTCGACGCCCATCCTCTGCAGAAGGCAGCATGATTGAGATTCCTGAGTTCCTTCGGAGGAGAGGACCT
TCTCGCTTCCCGCGAGTCTGACTGCCCAGGCTCCCTTCCCTTGCCCAGTATCTATGCTTATCAGCATTCTCCTAGATCAG
TCGCCTCATGTAGGATACCAGGCATGTACAGTACTGTAGTTGTTTGGTTGTTCAGTTTTGTTTACTCCCTTATGTTCTAT
ATTTTGAGATCTTACTGTTAATAATTTGTAGCAATGAGCTTGCTAATGCTATAGAAATCGTTTTATCCCAGTAGGTCAAA
ATGATCATATGCCCCTACTCAAGTTGTGTTCATCTCACGAGGCTTTTACTCGGTTGAGAGCCTGGAGGTTCCTCTGTTTT
ATCGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis