Browse Element(s) Details


OsAffx.28542.1.S1_at

Description gb:NM_187793.1
DB_XREF= gi:34902671
TID=OsAffx.28542.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0492E07.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2269011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22640Os.16249.2.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_a_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.2.S1_x_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22650Os.50124.1.S1_at11/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22650Os.48012.1.S1_x_at8/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28542.1.S1_at--1110--9231Chr07:12779839..12779863 (25 bp)
TCGCCTCCACTGTGGCGCCAAAAGG
LOC_Os07g22690
OsAffx.28542.1.S1_at--656--8651Chr07:12779849..12779873 (25 bp)
TGTGGCGCCAAAAGGACTCCCTCTT
LOC_Os07g22690
OsAffx.28542.1.S1_at--838--9291Chr07:12779873..12779897 (25 bp)
TCCGCTGGGTCGCAATCACCAAGGA
LOC_Os07g22690
OsAffx.28542.1.S1_at--1070--9331Chr07:12779882..12779906 (25 bp)
TCGCAATCACCAAGGACCCACTAGG
LOC_Os07g22690
OsAffx.28542.1.S1_at--924--10091Chr07:12779903..12779927 (25 bp)
TAGGCCCTGTCCTAGAGCAGTGCTT
LOC_Os07g22690
OsAffx.28542.1.S1_at--211--1371Chr07:12779916..12779940 (25 bp)
AGAGCAGTGCTTGGATATCCCCACG
LOC_Os07g22690
OsAffx.28542.1.S1_at--432--1131Chr07:12779921..12779945 (25 bp)
AGTGCTTGGATATCCCCACGACGCT
LOC_Os07g22690
OsAffx.28542.1.S1_at--1044--4331Chr07:12779994..12780018 (25 bp)
CCATGGACGCTTCGTCTTTGTATTA
LOC_Os07g22690
OsAffx.28542.1.S1_at--69--9411Chr07:12780005..12780029 (25 bp)
TCGTCTTTGTATTAGCGCTCCCTTA
LOC_Os07g22690
OsAffx.28542.1.S1_at--766--10211Chr07:12780014..12780038 (25 bp)
TATTAGCGCTCCCTTATTGGGACAC
LOC_Os07g22690
OsAffx.28542.1.S1_at--145--3671Chr07:12780026..12780050 (25 bp)
CTTATTGGGACACCGTCGCGATGGA
LOC_Os07g22690
Target Sequence 
TCGCCTCCACTGTGGCGCCAAAAGGACTCCCTCTTCCGCTGGGTCGCAATCACCAAGGACCCACTAGGCCCTGTCCTAGA
GCAGTGCTTGGATATCCCCACGACGCTCCCTAACCTCCGCCACAACGCCTCCCTCAACACACCCCTACTCGACTCCCATG
GACGCTTCGTCTTTGTATTAGCGCTCCCTTATTGGGACACCGTCGCGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis