Browse Element(s) Details


Os.37974.1.S1_at

Description gb:AK064772.1
DB_XREF= gi:32974790
TID=Os.37974.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000A18, full insert sequence.
FL= gb:AK064772.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2271011/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22720Os.10904.1.S1_at11/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22720Os.14834.1.S1_at1/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22730Os.30670.2.S1_x_at11/117+12824854..12825519AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37974.1.S1_at--1085--3151Chr07:12794097..12794121 (25 bp)
CAATTGAACGGACATCATCAAGTTT
LOC_Os07g22710
Os.37974.1.S1_at--151--8991Chr07:12794093..12794117 (25 bp)
TGAACGGACATCATCAAGTTTTCTC
LOC_Os07g22710
Os.37974.1.S1_at--799--5451Chr07:12794092..12794116 (25 bp)
GAACGGACATCATCAAGTTTTCTCC
LOC_Os07g22710
Os.37974.1.S1_at--750--7631Chr07:12794059..12794083 (25 bp)
GGGAGTATTTGCTATCATGGCATAA
LOC_Os07g22710
Os.37974.1.S1_at--882--6071Chr07:12794057..12794081 (25 bp)
GAGTATTTGCTATCATGGCATAAAG
LOC_Os07g22710
Os.37974.1.S1_at--662--4871Chr07:12794049..12794073 (25 bp)
GCTATCATGGCATAAAGATTTTCAT
LOC_Os07g22710
Os.37974.1.S1_at--1004--9831Chr07:12794037..12794061 (25 bp)
TAAAGATTTTCATTGCTGGGCAGAT
LOC_Os07g22710
Os.37974.1.S1_at--171--2811Chr07:12794035..12794059 (25 bp)
AAGATTTTCATTGCTGGGCAGATTG
LOC_Os07g22710
Os.37974.1.S1_at--691--172Chr05:6326368..6326396 (23 bp)
ATTTTCATTGCTGGGCAGATTGACA
NONE
Os.37974.1.S1_at--846--9591Chr07:12794028..12794052 (25 bp)
TCATTGCTGGGCAGATTGACAGTAA
LOC_Os07g22710
Os.37974.1.S1_at--289--9131Chr07:12794024..12794048 (25 bp)
TGCTGGGCAGATTGACAGTAACACA
LOC_Os07g22710
Target Sequence 
CAATTGAACGGACATCATCAAGTTTTCTCCTTGCAAAGGGGAGTATTTGCTATCATGGCATAAAGATTTTCATTGCTGGG
CAGATTGACAGTAACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis