Browse Element(s) Details


Os.14834.1.S1_at

Description gb:BI807372
DB_XREF= gi:15854560
DB_XREF=A001A08
CLONE=A001A08
TID=Os.14834.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14834 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g227201/11pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22720Os.10904.1.S1_at11/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22720Os.14834.1.S1_at1/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22730Os.30670.2.S1_x_at11/117+12824854..12825519AP2 domain containing protein
LOC_Os07g22740NANA7+12833220..12834899Transposable element protein, putative, Retrotrans_gag
LOC_Os07g22750NANA7+12835029..12836955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22760OsAffx.5408.1.S1_at11/117+12841691..12842291hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14834.1.S1_at--245--3311NONE
CACACGAACGGTGCTGTCTCATTTT
NONE
Os.14834.1.S1_at--117--5531NONE
GAAAACCACAGAGCACAGAGCCAAG
NONE
Os.14834.1.S1_at--1041--5111Chr07:12810354..12810378 (25 bp)
GCACAGAGCCAAGGGCAGGATGACC
LOC_Os07g22720
Os.14834.1.S1_at--49--8571NONE
TGGATTAAATTGTCGTTGTTCCTGT
NONE
Os.14834.1.S1_at--1105--9891NONE
TACTCCCCAAGTTCTTTACACGGAG
NONE
Os.14834.1.S1_at--844--9231NONE
TCCCCAAGTTCTTTACACGGAGAGT
NONE
Os.14834.1.S1_at--203--11NONE
TCTTTACACGGAGAGTAAATTCCCG
NONE
Os.14834.1.S1_at--530--8151NONE
GGAAACCATCAGGATACCCTTTATA
NONE
Os.14834.1.S1_at--63--3391NONE
CAGGATACCCTTTATAACGATTTGC
NONE
Os.14834.1.S1_at--585--2631NONE
AACCAAGAGGCCCAGAGTTAATAAT
NONE
Os.14834.1.S1_at--725--6211NONE
GAGGCCCAGAGTTAATAATTCCAAA
NONE
Target Sequence 
CACACGAACGGTGCTGTCTCATTTTGTATATTTCCATCATGATTTCGAGGAGGACCTGAAAACCACAGAGCACAGAGCCA
AGGGCAGGATGACCTGGTTTTTGGATTAAATTGTCGTTGTTCCTGTTTGTTTCGTTCCAGTTACAACTGGGAATTAGGAT
CAAATTTACAACCCTTCTTTTACCCCTTTTTATGGTTTACTCCCCAAGTTCTTTACACGGAGAGTAAATTCCCGGGAAAC
CATCAGGATACCCTTTATAACGATTTGCCCCCCTTTTACTTTTTTTTTTCATCTTTGTCAAAACCAAGAGGCCCAGAGTT
AATAATTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis