Browse Element(s) Details


Os.30670.2.S1_x_at

Description gb:NM_187803.1
DB_XREF= gi:34902691
GEN=P0710F09.8
TID=Os.30670.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.30670 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ethylene response factor ERF1 (P0710F09.8), mRNA.
PROD=putative ethylene response factor ERF1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2273011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22720Os.10904.1.S1_at11/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22720Os.14834.1.S1_at1/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22730Os.30670.2.S1_x_at11/117+12824854..12825519AP2 domain containing protein
LOC_Os07g22740NANA7+12833220..12834899Transposable element protein, putative, Retrotrans_gag
LOC_Os07g22750NANA7+12835029..12836955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22760OsAffx.5408.1.S1_at11/117+12841691..12842291hypothetical protein
LOC_Os07g22770Os.36817.1.S1_at11/117+12845239..12846716AP2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0042829biological_processdefense response to pathogen
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30670.2.S1_x_at--805--9411Chr07:12825420..12825444 (25 bp)
TCGTCGACATCCTCGGAATCGCAGC
LOC_Os07g22730
Os.30670.2.S1_x_at--460--8211Chr07:12825406..12825430 (25 bp)
GGAATCGCAGCCGTCTGGCTACGAC
LOC_Os07g22730
Os.30670.2.S1_x_at--1084--3371Chr07:12825399..12825423 (25 bp)
CAGCCGTCTGGCTACGACTACGAGA
LOC_Os07g22730
Os.30670.2.S1_x_at--920--9451Chr07:12825393..12825417 (25 bp)
TCTGGCTACGACTACGAGACGGCGG
LOC_Os07g22730
Os.30670.2.S1_x_at--539--3931Chr07:12825278..12825302 (25 bp)
CGGCGGGCTTCATCGGCGTGCGGAA
LOC_Os07g22730
Os.30670.2.S1_x_at--412--9611Chr07:12825224..12825248 (25 bp)
TCAGGGACTCCACGCGGAACGGCGT
LOC_Os07g22730
Os.30670.2.S1_x_at--321--1991Chr07:12825014..12825038 (25 bp)
ACTCCAAGCGAAAGCGGCGGAAGAG
LOC_Os07g22730
Os.30670.2.S1_x_at--358--1351Chr07:12824993..12825017 (25 bp)
AGAGATCAGAGCTGGCCGGTGCCAC
LOC_Os07g22730
Os.30670.2.S1_x_at--928--7631Chr07:12824921..12824945 (25 bp)
GGGAGCACAAGCAGATCGTCCTCGA
LOC_Os07g22730
Os.30670.2.S1_x_at--515--3291Chr07:12824916..12824940 (25 bp)
CACAAGCAGATCGTCCTCGAGCTGG
LOC_Os07g22730
Os.30670.2.S1_x_at--39--3932Chr07:10328115..10328135 (21 bp)
CGGCGCCGACTACCTAGAGGAGCTC
NONE
Target Sequence 
TCGTCGACATCCTCGGAATCGCAGCCGTCTGGCTACGACTACGAGACGGCGGGGAGCGCCGAGGTGTCGGCGCCCGGCGG
CGGTGCGGGCCGCGAGAGGGCGGCGAGAAAGGAGGAGGGCGGGGCGGGGGCGGCGGCGGCGGCGGCGGGCTTCATCGGCG
TGCGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCAGGGACTCCACGCGGAACGGCGTGCGGGTGTGGCTCGGCACG
TTCGAGACGGCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGGGGCGCGGCCGCGGCGCTCAACTT
CCCCGTGGAACGCGTGCGCGAGTCGCTCCGCGCGCTCGCGCTCGGCGCGGCCGGAGGCTCGCCCGTGCTGGCGCTGAAGG
GGCGGCACTCCAAGCGAAAGCGGCGGAAGAGATCAGAGCTGGCCGGTGCCACGGCGACGGCGAACAAGACGACGACGACG
ACGTCCGCCACGACCGGCGGGGAGCACAAGCAGATCGTCCTCGAGCTGGAGGACCTCGGCGCCGACTACCTAGAGGAGCT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30670.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis