Browse Element(s) Details


Os.2714.1.S1_s_at

Description gb:AF194414.2
DB_XREF= gi:12592068
GEN=CDPK5
TID=Os.2714.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2714 (NCBI UniGene Cluster)
DEF=Oryza sativa calcium-dependent protein kinase (CDPK5) mRNA, complete cds.
PROD=calcium-dependent protein kinase
FL= gb:AF194414.2 gb:AK121471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2271011/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22720Os.10904.1.S1_at11/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22720Os.14834.1.S1_at1/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22730Os.30670.2.S1_x_at11/117+12824854..12825519AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2714.1.S1_s_at--534--2951Chr07:12796000..12796024 (25 bp)
AATGGAACAATTAGTCTGGAAGAAC
LOC_Os07g22710
Os.2714.1.S1_s_at--453--5011Chr07:12794797..12794821 (25 bp)
GCAGGCTCTTGCAAAGGATGTTCCA
LOC_Os07g22710
Os.2714.1.S1_s_at--1114--6631Chr07:12794778..12794802 (25 bp)
GTTCCATGGAGATTAAAGGGTCCAC
LOC_Os07g22710
Os.2714.1.S1_s_at--223--1031Chr07:12794762..12794786 (25 bp)
AGGGTCCACGTGTTTTAGAGATTGT
LOC_Os07g22710
Os.2714.1.S1_s_at--654--9871Chr07:12793959..12793983 (25 bp)
TACATGTGCATCAGCTAGTGGAACA
LOC_Os07g22710
Os.2714.1.S1_s_at--952--5311Chr07:12793925..12793949 (25 bp)
GAAGTGGAAATCATTGTCTCAAGCT
LOC_Os07g22710
Os.2714.1.S1_s_at--1099--6651Chr07:12793882..12793906 (25 bp)
GTTGACGGAGATGGCTATATCACAT
LOC_Os07g22710
Os.2714.1.S1_s_at--244--8971Chr07:12793667..12793691 (25 bp)
TGAAAGGTTCTATTGATCCCCTCCT
LOC_Os07g22710
Os.2714.1.S1_s_at--927--1291Chr07:12793603..12793627 (25 bp)
AGATGAATTTCGCAGGCTCCTGAAA
LOC_Os07g22710
Os.2714.1.S1_s_at--802--6751Chr07:12793565..12793589 (25 bp)
GTTCACGCAATGTACAAACTCCGAG
LOC_Os07g22710
Os.2714.1.S1_s_at--246--3811Chr07:12793547..12793571 (25 bp)
CTCCGAGGAGTGTTCACAGATCGTA
LOC_Os07g22710
Target Sequence 
AATGGAACAATTAGTCTGGAAGAACTGAAGCAGGCTCTTGCAAAGGATGTTCCATGGAGATTAAAGGGTCCACGTGTTTT
AGAGATTGTTGAGGCAATTGACAGTAACACAGATGGATTAGTTGATTTCGAAGAGTTTGTTGCTGCAACATTACATGTGC
ATCAGCTAGTGGAACATGATACTGAGAAGTGGAAATCATTGTCTCAAGCTGCATTTGATAAATTTGATGTTGACGGAGAT
GGCTATATCACATCTGATGAACTGAGAATGCAAACAGGACTGAAAGGTTCTATTGATCCCCTCCTGGAGGAGGCTGACAT
TGACAGAGATGGAAAAATAAGCCTAGATGAATTTCGCAGGCTCCTGAAAACTGCAAGCATGAGTTCACGCAATGTACAAA
CTCCGAGGAGTGTTCACAGATCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2714.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis