Browse Element(s) Details


Os.10904.1.S1_at

Description gb:AK070846.1
DB_XREF= gi:32980869
TID=Os.10904.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by RiceHMM etc. (P0492E07.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023068C09, full insert sequence.
FL= gb:AK070846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2272011/11pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22720Os.10904.1.S1_at11/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22720Os.14834.1.S1_at1/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22730Os.30670.2.S1_x_at11/117+12824854..12825519AP2 domain containing protein
LOC_Os07g22740NANA7+12833220..12834899Transposable element protein, putative, Retrotrans_gag
LOC_Os07g22750NANA7+12835029..12836955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22760OsAffx.5408.1.S1_at11/117+12841691..12842291hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0004742molecular_functiondihydrolipoyllysine-residue acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10904.1.S1_at--149--10351Chr07:12810237..12810261 (25 bp)
TTTATGGGTTTACTCCGCAAGTTCG
LOC_Os07g22720
Os.10904.1.S1_at--148--10351Chr07:12810236..12810260 (25 bp)
TTATGGGTTTACTCCGCAAGTTCGT
LOC_Os07g22720
Os.10904.1.S1_at--573--10091Chr07:12810235..12810259 (25 bp)
TATGGGTTTACTCCGCAAGTTCGTT
LOC_Os07g22720
Os.10904.1.S1_at--64--7871Chr07:12810231..12810255 (25 bp)
GGTTTACTCCGCAAGTTCGTTGACA
LOC_Os07g22720
Os.10904.1.S1_at--413--6831Chr07:12810230..12810254 (25 bp)
GTTTACTCCGCAAGTTCGTTGACAG
LOC_Os07g22720
Os.10904.1.S1_at--531--8151Chr07:12810190..12810214 (25 bp)
GGAAACCATGCAGGATAGCCTTTAT
LOC_Os07g22720
Os.10904.1.S1_at--83--2651Chr07:12810187..12810211 (25 bp)
AACCATGCAGGATAGCCTTTATACG
LOC_Os07g22720
Os.10904.1.S1_at--1123--9031Chr07:12810182..12810206 (25 bp)
TGCAGGATAGCCTTTATACGATTTG
LOC_Os07g22720
Os.10904.1.S1_at--1043--7931Chr07:12810178..12810202 (25 bp)
GGATAGCCTTTATACGATTTGCCCC
LOC_Os07g22720
Os.10904.1.S1_at--1080--4371Chr07:12810121..12810145 (25 bp)
CCAAGAGGCGCAGAGGTAATAAGTT
LOC_Os07g22720
Os.10904.1.S1_at--791--5031Chr07:12810112..12810136 (25 bp)
GCAGAGGTAATAAGTTGCAAATCTT
LOC_Os07g22720
Target Sequence 
TTTATGGGTTTACTCCGCAAGTTCGTTGACAGNAGAGTAAATTCCCGGGAAACCATGCAGGATAGCCTTTATACGATTTG
CCCCCTTTTTACTTTTTTTTTNCATCTTTGTGCAAAACCAAGAGGCGCAGAGGTAATAAGTTGCAAATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis