Browse Element(s) Details


OsAffx.28541.2.S1_s_at

Description tigr:9635.m02144
TID=OsAffx.28541.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2266011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22640Os.16249.2.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_a_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.2.S1_x_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22650Os.50124.1.S1_at11/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22650Os.48012.1.S1_x_at8/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28541.2.S1_s_at--141--2451Chr07:12767984..12768008 (25 bp)
AAAATTTGGCGTGATCAGTGGATAC
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--605--5691Chr07:12767952..12767976 (25 bp)
GACTTCTCTCAAATTGGCAGGCCAG
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--1161--9171Chr07:12767918..12767942 (25 bp)
TGCCGGATGCGATGGGTTTCTGAAC
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--548--8731Chr07:12767843..12767867 (25 bp)
TGTCAACCTTGTGATGTCCCTGAAA
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--660--2391Chr07:12767807..12767831 (25 bp)
AAACTACCGCAGTATCAGTCGGAGG
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--859--7931Chr07:12767784..12767808 (25 bp)
GGATTTTCTTGCTTGGCACTATGAG
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--786--9831Chr07:12767727..12767751 (25 bp)
TAAAGTCGCCTTGAAGTCTCAGCTG
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--806--1151Chr07:12767713..12767737 (25 bp)
AGTCTCAGCTGCCTTCCAATATGGG
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--999--7531Chr07:12767588..12767612 (25 bp)
GTGGCTACTATGTGCAACCGGATAA
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--710--3691Chr07:12767542..12767566 (25 bp)
CTATCTGTCGCATTTGTGGTCTGGA
LOC_Os07g22660
OsAffx.28541.2.S1_s_at--72--6071Chr07:12767507..12767531 (25 bp)
GAGTTCCACGCTTTTATTTCATGTA
LOC_Os07g22660
Target Sequence 
AAAATTTGGCGTGATCAGTGGATACTGAGGGAGACTTCTCTCAAATTGGCAGGCCAGAAGGGTAGGTGCCGGATGCGATG
GGTTTCTGAACCGATTAATCAGGAGGACAGATCATGGGATGTTGGACTGATATATCAGGTGTGTCAACCTTGTGATGTCC
CTGAAATTCTGAGGATTAAACTACCGCAGTATCAGTCGGAGGATTTTCTTGCTTGGCACTATGAGAAGTCGGGTGTTTTC
TCAGTTTGGAGTGTTTATAAAGTCGCCTTGAAGTCTCAGCTGCCTTCCAATATGGGGGCATCTAGCTGCTCGGCGAGTGG
AGAACGGAGCATCTGGAGAAGATTTGGAACTCAGTTCCAAATAAGGTTAAGATTTTTGCTTGGCGTGTGGCTAAAGGTGG
CTACTATGTGCAACCGGATAACTCGAAAAATGGAAAATAATGCTATCTGTCGCATTTGTGGTCTGGAGGAGGAAGATGAG
TTCCACGCTTTTATTTCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28541.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis