Browse Element(s) Details


Os.31679.1.S1_at

Description gb:AK106929.1
DB_XREF= gi:32992138
TID=Os.31679.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, At3g60400 (P0492E07.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C01, full insert sequence.
FL= gb:AK106929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2267011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22640Os.16249.2.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_a_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.2.S1_x_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22650Os.50124.1.S1_at11/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22650Os.48012.1.S1_x_at8/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31679.1.S1_at--349--6091Chr07:12771108..12771132 (25 bp)
GAGTACCTCGAGTTATTTCCAGCAT
LOC_Os07g22670
Os.31679.1.S1_at--186--7531Chr07:12771031..12771055 (25 bp)
GTGGCTCCGAGAGAATGGTCTTCTT
LOC_Os07g22670
Os.31679.1.S1_at--582--3571Chr07:12771009..12771033 (25 bp)
CTTAGAAGAACATTAGCCCCTGCAA
LOC_Os07g22670
Os.31679.1.S1_at--789--5151Chr07:12770988..12771012 (25 bp)
GCAACTGTGCTTGCTAACTCAGAGA
LOC_Os07g22670
Os.31679.1.S1_at--770--5351Chr07:12770965..12770989 (25 bp)
GAAGAGGTTCATTTCCAACCTGTAC
LOC_Os07g22670
Os.31679.1.S1_at--589--1771Chr07:12770948..12770972 (25 bp)
ACCTGTACAATGTGCATCCTGCAGC
LOC_Os07g22670
Os.31679.1.S1_at--876--3891Chr07:12770916..12770940 (25 bp)
CTGTGGCTTGAGTGCTTTTCTTCAA
LOC_Os07g22670
Os.31679.1.S1_at--593--8171Chr07:12770867..12770891 (25 bp)
GGAACATATATCACCAGCATGCTGA
LOC_Os07g22670
Os.31679.1.S1_at--781--3272Chr01:41630046..41630131 (24 bp)
CAAAATTCTTTGCTCCTGCATATTT
NONE
Os.31679.1.S1_at--641--991Chr07:12770580..12770604 (25 bp)
AGGTTGTAACTGATCTTGGCTTCGT
LOC_Os07g22670
Os.31679.1.S1_at--520--8291Chr07:12770563..12770587 (25 bp)
GGCTTCGTTTATTCATGAGTGCATG
LOC_Os07g22670
Target Sequence 
GAGTACCTCGAGTTATTTCCAGCATTTCTGTGCTTTGATTTGGAGAANCGGGTAAAGCCTAGGTATACAATGCTTCGGTG
GCTCCGAGAGAATGGTCTTCTTAGAAGAACATTAGCCCCTGCAACTGTGCTTGCTAACTCAGAGAAGAGGTTCATTTCCA
ACCTGTACAATGTGCATCCTGCAGCTCCAAAGCTGTGGCTTGAGTGCTTTTCTTCAAGAAAGCACATGGAGTATTATCTC
AGGAACATATATCACCAGCATGCTGATACCAAATAATTTAANTGNATTTAANTTCTATTGATACGATTCTGAGANGNTAA
TGATTGNTACCNTGCGAGTCTTTTGNGGCATNCCCTCTNCCTATTGAGGGTACNTTCTTANTTGCTACAGGNTTCACTCT
GCAAAATTCTTTGCTCCTGCATATTTTAACAATAGTATGCAGGATGTAGGATGGAGTAGAATATAGCAATGGAAAATGAA
TGTAACTTAATTTCCATAAAAACTGAGTTGTACATTGTACCTGAATAATTTATAGGTTGTAACTGATCTTGGCTTCGTTT
ATTCATGAGTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis