Browse Element(s) Details


Os.48012.1.S1_x_at

Description gb:CR291860
DB_XREF= gi:44678426
DB_XREF=CR291860
CLONE=p822f04p3
TID=Os.48012.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to xylulose kinase (P0492E07.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g226508/11xylulose kinase like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22640Os.16249.2.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_a_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.2.S1_x_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22650Os.50124.1.S1_at11/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22650Os.48012.1.S1_x_at8/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004856molecular_functionxylulokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48012.1.S1_x_at--985--6511Chr07:12763877..12763901 (25 bp)
GATTACTACCCTCTGCCTAAGAGAG
LOC_Os07g22650
Os.48012.1.S1_x_at--780--6171Chr07:12763899..12763923 (25 bp)
GAGGAGAAAGGTTCCCTGTCTCCGA
LOC_Os07g22650
Os.48012.1.S1_x_at--410--5631Chr07:12764211..12764235 (25 bp)
GACACGGCGTACTTGCATGGCATAC
LOC_Os07g22650
Os.48012.1.S1_x_at--477--3571Chr07:12764231..12764255 (25 bp)
CATACTGGAGTCGATCGCGCGGATT
LOC_Os07g22650
Os.48012.1.S1_x_at--802--3051Chr07:12764723..12764747 (25 bp)
AATCTGTTGAAGGAGCTCGGCGCGA
LOC_Os07g22650
Os.48012.1.S1_x_at--1098--4751Chr07:12764870..12764894 (25 bp)
GCTGCACTGCTAGCACTCAAGGGTG
LOC_Os07g22650
Os.48012.1.S1_x_at--199--7771Chr07:12764891..12764915 (25 bp)
GGTGCTAATACTACGCACTAGCGCT
LOC_Os07g22650
Os.48012.1.S1_x_at--415--1851Chr07:12764903..12764927 (25 bp)
ACGCACTAGCGCTCTAATTTAGCAA
LOC_Os07g22650
Os.48012.1.S1_x_at--440--3771Chr07:12764981..12765028 (25 bp)
CGCAAACTTATAATACGACACTGTT
NONE
Os.48012.1.S1_x_at--540--1851Chr07:12765018..12765042 (25 bp)
ACGACACTGTTTACTTTTGGACATA
NONE
Os.48012.1.S1_x_at--601--8131Chr07:12765036..12765060 (25 bp)
GGACATAATGTTTGATCTTTGTTTT
NONE
Target Sequence 
GATTACTACCCTCTGCCTAAGAGAGGAGAAAGGTTCCCTGTCTCCGACCCCNACATGATGCCANNNCTGCAGCNTAGGCC
GGAGAGCGACACGGCGTACTTGCATGGCATACTGGAGTCGATCGCGCGGATTGAGGCAAAGGGGTACAATCTGTTGAAGG
AGCTCGGCGCGAGCATGGTGGAGGAGGTTTTGACGGCGGGTGGAGGAGCTCGGAACGATAAGTGGACGGCGATAAGGGGA
AGGGTGCTTGGCGTTCCGGTGAGAAAGGCGGAGCAGACGGAGGCGGCCTACGGNGCTGCACTGCTAGCACTCAAGGGTGC
TAATACTACGCACTAGCGCTCTAATTTAGCAAAATATATGTACATATACAGTTTTTTAATGATATATTTGTGNTNTGCGT
TGCAATCGCAAACTTATAATACGACACTGTTTACTTTTGGACATAATGTTTGATCTTTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48012.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis