Browse Element(s) Details


Os.36817.1.S1_at

Description gb:AK062612.1
DB_XREF= gi:32972630
TID=Os.36817.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ethylene response factor ERF1-like protein (P0710F09.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-A10, full insert sequence.
FL= gb:AK062612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2277011/11AP2 domain containing protein, expressed
LOC_Os01g084601/11TMS membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22730Os.30670.2.S1_x_at11/117+12824854..12825519AP2 domain containing protein
LOC_Os07g22740NANA7+12833220..12834899Transposable element protein, putative, Retrotrans_gag
LOC_Os07g22750NANA7+12835029..12836955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22760OsAffx.5408.1.S1_at11/117+12841691..12842291hypothetical protein
LOC_Os07g22770Os.36817.1.S1_at11/117+12845239..12846716AP2 domain containing protein, expressed
LOC_Os07g22784NANA7+12859119..12859264NA
LOC_Os07g22800NANA7+12862728..12864535retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22810OsAffx.19542.3.S1_x_at2/117+12865619..12866554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22820OsAffx.14826.2.S1_at1/117+12869844..12872325Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0042829biological_processdefense response to pathogen
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36817.1.S1_at--358--571Chr07:12845726..12845750 (25 bp)
ATCCTACTACTTGCTGTCTGGCTCT
LOC_Os07g22770
Os.36817.1.S1_at--1125--9451Chr07:12845710..12845734 (25 bp)
TCTGGCTCTCTCTAGAGTGCCAATA
LOC_Os07g22770
Os.36817.1.S1_at--613--8591Chr07:12845641..12845665 (25 bp)
TGGTCACCACCATATTATACGCACA
LOC_Os07g22770
Os.36817.1.S1_at--490--10351Chr07:12845561..12845585 (25 bp)
TTTATCGGACACAAGGACCTACTTC
LOC_Os07g22770
Os.36817.1.S1_at--963--5831Chr07:12845546..12845570 (25 bp)
GACCTACTTCCCAAAAGCTAGCTAG
LOC_Os07g22770
Os.36817.1.S1_at--991--4852Chr07:12845530..12845554 (25 bp)
GCTAGCTAGCTTGATGCATGCATCT
LOC_Os07g22770
Os.36817.1.S1_at--623--431Chr07:12845509..12845533 (25 bp)
ATCTTGCCCCATGGGTACACATAAT
LOC_Os07g22770
Os.36817.1.S1_at--724--8271Chr07:12845464..12845488 (25 bp)
GGCATGTGCCCAAATTAGTACTATC
LOC_Os07g22770
Os.36817.1.S1_at--318--10131Chr07:12845421..12845445 (25 bp)
TATGACCGTGATTTTACTCTCGAAA
LOC_Os07g22770
Os.36817.1.S1_at--282--10491Chr07:12845386..12845410 (25 bp)
TTAACAACTTTCTATGCTCCCTCGA
LOC_Os07g22770
Os.36817.1.S1_at--1062--2171Chr07:12845311..12845335 (25 bp)
ACACTTTCAGCTTGTTGTTAAACGG
LOC_Os07g22770
Target Sequence 
ATCCTACTACTTGCTGTCTGGCTCTCTCTAGAGTGCCAATAAAGTGCAGACAATGCAACACATGCTGGAGCAAGCAACAA
TTTGGTGGTCACCACCATATTATACGCACAACATGCTGAAGTATTTTCAAGGTGTGTACTTTGGGCGGGGACTGAACTTT
ATGTCTTTATCGGACACAAGGACCTACTTCCCAAAAGCTAGCTAGCTTGATGCATGCATCTTGCCCCATGGGTACACATA
ATAATATTATTAAACTTTGTATGGCATGTGCCCAAATTAGTACTATCAACATTTATATGTACTAGTATGACCGTGATTTT
ACTCTCGAAATTCACTGTACTTAACAACTTTCTATGCTCCCTCGAGTAATTAAGGTAAAAGAGAGTAACTCAAAAATACG
TTAAGCTACCATTAAACACTTTCAGCTTGTTGTTAAACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis