Browse Element(s) Details


OsAffx.16363.1.S1_x_at

Description gb:NM_187781.1
DB_XREF= gi:34902647
GEN=P0492E07.9
TID=OsAffx.16363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) transposase-like protein (P0492E07.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2259011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22550OsAffx.22699.1.S1_x_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.16111.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.20615.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.10039.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22560OsAffx.22250.2.S1_x_at11/117+12692786..12695518hypothetical protein
LOC_Os07g22570Os.34643.1.S1_at11/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_s_at4/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_at1/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580Os.32592.1.S1_at11/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22580Os.51549.1.S1_at1/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22590OsAffx.16363.2.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_x_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.4116.1.S1_x_at1/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22600Os.4599.1.S1_at10/117+12714877..12721201Spermidine synthase 1, putative, expressed
LOC_Os07g22610Os.38395.3.S1_x_at11/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.2.S1_x_at9/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.4.S1_x_at4/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.1.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.5.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22620NANA7+12729827..12734933retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16363.1.S1_x_at--92--6571Chr07:12709886..12709999 (25 bp)
GATTCATTTAATCCTGCTCACTGGT
LOC_Os07g22590
OsAffx.16363.1.S1_x_at--250--571Chr07:12709990..12710009 (20 bp)
ATCCTGCTCACTGGTGGAATGTCTG
LOC_Os07g22590
OsAffx.16363.1.S1_x_at--799--2711Chr07:12710018..12710042 (25 bp)
AAGCACCATATTTGCAAGGGTTTGC
LOC_Os07g22590
OsAffx.16363.1.S1_x_at--412--5671Chr07:12710061..12710085 (25 bp)
GACATGCAGCTCTTCAGGTTGTGAA
LOC_Os07g22590
OsAffx.16363.1.S1_x_at--883--331Chr07:12710431..12710455 (25 bp)
ATACAGCTGAAACACCAGTCCTGGC
LOC_Os07g22590
OsAffx.16363.1.S1_x_at--751--7251Chr07:12710448..12710472 (25 bp)
GTCCTGGCACAAAGAGATCACCTAG
LOC_Os07g22590
OsAffx.16363.1.S1_x_at--127--2591Chr07:12710496..12710567 (25 bp)
AACGTGCGAAAAGCGCCAATCCTTG
LOC_Os07g22590
OsAffx.16363.1.S1_x_at--901--5191Chr07:12710582..12710606 (25 bp)
GAATTGACTTCCTCTGAACATGAGT
LOC_Os07g22590
OsAffx.16363.1.S1_x_at--848--8971Chr07:12710596..12710620 (25 bp)
TGAACATGAGTTCCTTGCTTCCGAT
LOC_Os07g22590
OsAffx.16363.1.S1_x_at--364--1232Chr10:12148814..12148838 (25 bp)
AGTTCCTTGCTTCCGATGATGATCA
NONE
OsAffx.16363.1.S1_x_at--762--6292Chr10:12148831..12148855 (25 bp)
GATGATCATGAGACTGAAGTTTCAG
NONE
Target Sequence 
GATTCATTTAATCCTGCTCACTGGTGGAATGTCTGGGGATCAAAAGCACCATATTTGCAAGGGTTTGCTACAAAAATTCT
AAACTTGACATGCAGCTCTTCAGGTTGTGAAAGAAATTGGAGTGCATTTGAATGGACTCAAACAAAGAAAAGAAACAAGC
TAATTGTTCAAAGGCTAAATGACATTGTTTTTGTACAACTCAACTCAAGAATGAAGAAGAAGGATGGTTCAGCGCAGAAA
GAAGATGCTACAATGGAAGCATGCGAAGACAATGACACTTGTAATGTTGAAGGTTGGCTTCAAGATGAATCTGAAGGCTC
ACAAAATGTGGCAAGAACTCAAACTTGGGGTTATACAGCTGAAACACCAGTCCTGGCACAAAGAGATCACCTAGAAAACA
AACCAGGGAATCAGCAAAACGTGCGAAAAGCGCCAATCCTTGATGAAAGTGACAAGGAATTGACTTCCTCTGAACATGAG
TTCCTTGCTTCCGATGATGATCATGAGACTGAAGTTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16363.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis