Browse Element(s) Details

Os.5530.2.S1_s_at

Description

gb:CB640460
DB_XREF= gi:29635451
DB_XREF=OSJNEa14P03.f
CLONE=OSJNEa14P03
TID=Os.5530.2
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.5530 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g27110	11/11	hypothetical protein
LOC_Os07g22494	11/11	expressed protein
LOC_Os01g54190	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g27080	NA	NA	5	+	15664234..15674286	retrotransposon protein, putative, unclassified
LOC_Os05g27090	Os.11231.1.S1_at	11/11	5	+	15674973..15676697	expressed protein
LOC_Os05g27100	Os.8457.1.S1_at	11/11	5	+	15692557..15695566	heavy metal-associated domain containing protein, expressed
LOC_Os05g27110	Os.5530.2.S1_s_at	11/11	5	+	15699189..15700298	hypothetical protein
LOC_Os05g27110	Os.5530.2.S1_a_at	8/11	5	+	15699189..15700298	hypothetical protein
LOC_Os05g27110	Os.5530.2.S1_x_at	7/11	5	+	15699189..15700298	hypothetical protein
LOC_Os05g27110	Os.42141.1.S1_x_at	6/11	5	+	15699189..15700298	hypothetical protein
LOC_Os05g27110	OsAffx.5404.1.S1_at	6/11	5	+	15699189..15700298	hypothetical protein
LOC_Os05g27110	Os.5530.3.S1_x_at	6/11	5	+	15699189..15700298	hypothetical protein
LOC_Os05g27110	Os.34819.3.S1_x_at	1/11	5	+	15699189..15700298	hypothetical protein
LOC_Os05g27120	OsAffx.21629.2.S1_x_at	11/11	5	+	15701305..15701847	hypothetical protein
LOC_Os05g27120	OsAffx.16924.1.S1_x_at	4/11	5	+	15701305..15701847	hypothetical protein
LOC_Os05g27130	Os.47463.1.S1_x_at	3/11	5	+	15711182..15712171	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27130	Os.14491.2.S1_x_at	3/11	5	+	15711182..15712171	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27140	Os.14491.2.S1_x_at	4/11	5	+	15714170..15718937	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27140	Os.47463.1.S1_x_at	3/11	5	+	15714170..15718937	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27150	NA	NA	5	+	15720344..15722614	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27160	OsAffx.27035.1.S1_at	10/11	5	+	15724296..15724730	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5530.2.S1_s_at--881--377	3	Chr01:31493125..31493149 (25 bp)	CTCTCCATGGTATGATCTCTCTCTT	LOC_Os01g54190
Os.5530.2.S1_s_at--727--949	3	Chr01:31493126..31493150 (25 bp)	TCTCCATGGTATGATCTCTCTCTTC	LOC_Os01g54190
Os.5530.2.S1_s_at--370--923	3	Chr01:31493128..31493152 (25 bp)	TCCATGGTATGATCTCTCTCTTCCC	LOC_Os01g54190
Os.5530.2.S1_s_at--806--1029	3	Chr01:31493165..31493189 (25 bp)	TTTCTTCCCTCCTGCACGCATGGAG	LOC_Os01g54190
Os.5530.2.S1_s_at--764--1065	3	Chr01:31493169..31493193 (25 bp)	TTCCCTCCTGCACGCATGGAGAAGG	LOC_Os01g54190
Os.5530.2.S1_s_at--707--21	3	Chr01:31493204..31493228 (25 bp)	ATTTGATTTGTGAAGAGAAGCATTT	LOC_Os01g54190
Os.5530.2.S1_s_at--419--597	3	Chr01:31493218..31493242 (25 bp)	GAGAAGCATTTTACTTTTCACCTGG	LOC_Os01g54190
Os.5530.2.S1_s_at--335--539	3	Chr01:31493220..31493244 (25 bp)	GAAGCATTTTACTTTTCACCTGGAC	LOC_Os01g54190
Os.5530.2.S1_s_at--450--271	3	Chr01:31493221..31493245 (25 bp)	AAGCATTTTACTTTTCACCTGGACA	LOC_Os01g54190
Os.5530.2.S1_s_at--4--153	3	Chr01:31493222..31493246 (25 bp)	AGCATTTTACTTTTCACCTGGACAG	LOC_Os01g54190
Os.5530.2.S1_s_at--624--495	3	Chr01:31493223..31493247 (25 bp)	GCATTTTACTTTTCACCTGGACAGC	LOC_Os01g54190

Target Sequence

CTCTCCATGGTATGATCTCTCTCTTCCCACCCCATGTCTCTTTCTTCCCTCCTGCACGCATGGAGAAGGGCCTTTGTGGA
TTTGATTTGTGAAGAGAAGCATTTTACTTTTCACCTGGACAGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis