Browse Element(s) Details


Os.8457.1.S1_at

Description gb:AU198228
DB_XREF= gi:14714305
DB_XREF=AU198228
CLONE=S16296
TID=Os.8457.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8457 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568306.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2710011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27080NANA5+15664234..15674286retrotransposon protein, putative, unclassified
LOC_Os05g27090Os.11231.1.S1_at11/115+15674973..15676697expressed protein
LOC_Os05g27100Os.8457.1.S1_at11/115+15692557..15695566heavy metal-associated domain containing protein, expressed
LOC_Os05g27110Os.5530.2.S1_s_at11/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.2.S1_a_at8/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.2.S1_x_at7/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.42141.1.S1_x_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110OsAffx.5404.1.S1_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.3.S1_x_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.34819.3.S1_x_at1/115+15699189..15700298hypothetical protein
LOC_Os05g27120OsAffx.21629.2.S1_x_at11/115+15701305..15701847hypothetical protein
LOC_Os05g27120OsAffx.16924.1.S1_x_at4/115+15701305..15701847hypothetical protein
LOC_Os05g27130Os.47463.1.S1_x_at3/115+15711182..15712171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27130Os.14491.2.S1_x_at3/115+15711182..15712171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27140Os.14491.2.S1_x_at4/115+15714170..15718937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27140Os.47463.1.S1_x_at3/115+15714170..15718937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27150NANA5+15720344..15722614transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8457.1.S1_at--12--7731Chr05:15692933..15692957 (25 bp)
GGGTGGCCTCAAACCTGGTAGAAGC
LOC_Os05g27100
Os.8457.1.S1_at--444--3471Chr05:15692904..15692928 (25 bp)
CAGGGAGCTGGCTTCAAGCTGCAAA
LOC_Os05g27100
Os.8457.1.S1_at--854--9011Chr05:15692885..15692909 (25 bp)
TGCAAACACTTAGCCTCAGCTTCGA
LOC_Os05g27100
Os.8457.1.S1_at--414--2991Chr05:15692853..15692877 (25 bp)
AATGAGGATGCAGCCACAGTCGCAG
LOC_Os05g27100
Os.8457.1.S1_at--666--7991Chr05:15692824..15692848 (25 bp)
GGATGACGACCAAGCCACAGAGTGA
LOC_Os05g27100
Os.8457.1.S1_at--994--10111Chr05:15692794..15692818 (25 bp)
TATGTCATGTCAACAGCTGCTGATC
LOC_Os05g27100
Os.8457.1.S1_at--766--4771Chr05:15692779..15692803 (25 bp)
GCTGCTGATCAGAGCTACTTCAATT
LOC_Os05g27100
Os.8457.1.S1_at--253--3011Chr05:15692749..15692773 (25 bp)
AATGCATACGATTTGCTCATGTTAT
LOC_Os05g27100
Os.8457.1.S1_at--417--3591Chr05:15692711..15692735 (25 bp)
CATTTTGTTTAGTTGCTGCACAGCA
LOC_Os05g27100
Os.8457.1.S1_at--542--4191Chr05:15692684..15692708 (25 bp)
CCCTCTCCTTGTAATCTCTGAGGAA
LOC_Os05g27100
Os.8457.1.S1_at--503--5331Chr05:15692652..15692676 (25 bp)
GAAGTTCTAGCTTATGGCCAACAAA
LOC_Os05g27100
Target Sequence 
GGGTGGCCTCAAACCTGGTAGAAGCCATCCAGGGAGCTGGCTTCAAGCTGCAAACACTTAGCCTCAGCTTCGACGATTTT
AATGAGGATGCAGCCACAGTCGCAGGAGAGGATGACGACCAAGCCACAGAGTGAGTGACTATGTCATGTCAACAGCTGCT
GATCAGAGCTACTTCAATTTGCGGAATGCATACGATTTGCTCATGTTATTGGCACTCTTCAACATTTTGTTTAGTTGCTG
CACAGCACTCCCTCTCCTTGTAATCTCTGAGGAAGTTCGTTGAAGTTCTAGCTTATGGCCAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis