Browse Element(s) Details


Os.11231.1.S1_at

Description gb:AK063202.1
DB_XREF= gi:32973220
TID=Os.11231.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-C09, full insert sequence.
FL= gb:AK063202.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2709011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27050OsAffx.14845.1.S1_at10/115+15649520..15651101Peptide transporter PTR2, putative, expressed
LOC_Os05g27060Os.28346.3.S1_x_at10/115+15654616..15660322retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g27080NANA5+15664234..15674286retrotransposon protein, putative, unclassified
LOC_Os05g27090Os.11231.1.S1_at11/115+15674973..15676697expressed protein
LOC_Os05g27100Os.8457.1.S1_at11/115+15692557..15695566heavy metal-associated domain containing protein, expressed
LOC_Os05g27110Os.5530.2.S1_s_at11/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.2.S1_a_at8/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.2.S1_x_at7/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.42141.1.S1_x_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110OsAffx.5404.1.S1_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.3.S1_x_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.34819.3.S1_x_at1/115+15699189..15700298hypothetical protein
LOC_Os05g27120OsAffx.21629.2.S1_x_at11/115+15701305..15701847hypothetical protein
LOC_Os05g27120OsAffx.16924.1.S1_x_at4/115+15701305..15701847hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11231.1.S1_at--219--2551Chr05:15676548..15676572 (25 bp)
AACTCTTACCCATTCTCATGCGGTA
LOC_Os05g27090
Os.11231.1.S1_at--244--771Chr05:15675698..15675722 (25 bp)
ATGTCTATAATCTCTGATGCATCAA
LOC_Os05g27090
Os.11231.1.S1_at--570--5391Chr05:15675657..15675681 (25 bp)
GAAGCAGAAGATTGCCGCACTGAAC
LOC_Os05g27090
Os.11231.1.S1_at--1117--3091Chr05:15675605..15675629 (25 bp)
AATATTTGCGAAGAACCCTCACCTG
LOC_Os05g27090
Os.11231.1.S1_at--727--3191Chr05:15675465..15675489 (25 bp)
CAAGTTCTAGACAAGGGTTTCCTCA
LOC_Os05g27090
Os.11231.1.S1_at--274--7691Chr05:15675451..15675475 (25 bp)
GGGTTTCCTCATCAATGTGTTCATG
LOC_Os05g27090
Os.11231.1.S1_at--966--9231Chr05:15675399..15675423 (25 bp)
TCCATTCTGCAAGCCTTCGATGAGT
LOC_Os05g27090
Os.11231.1.S1_at--638--3331Chr05:15675367..15675391 (25 bp)
CACTGTGATTGAGGCTAGGGCTTCA
LOC_Os05g27090
Os.11231.1.S1_at--122--10071Chr05:15675352..15675376 (25 bp)
TAGGGCTTCATGCTCCAATTCATTT
LOC_Os05g27090
Os.11231.1.S1_at--746--5151Chr05:15675110..15675134 (25 bp)
GCAAGCCATCAAGAGCACTCCAGGA
LOC_Os05g27090
Os.11231.1.S1_at--524--10131Chr05:15675049..15675073 (25 bp)
TATGCATGCTTGATCGAGCTGGAGC
LOC_Os05g27090
Target Sequence 
AACTCTTACCCATTCTCATGCGGTAAATAAAATGTCTATAATCTCTGATGCATCAACATACATCAAAGATCTGAAGCAGA
AGATTGCCGCACTGAACAAAGAATTAGGGTGTGCAAAGAACATGAATATTTGCGAAGAACCCTCACCTGTGGTGAGAGTT
CAAGTTCTAGACAAGGGTTTCCTCATCAATGTGTTCATGGACAAAAGCAGCCCTGGGCTACTATCCTCCATTCTGCAAGC
CTTCGATGAGTTAGGACTCACTGTGATTGAGGCTAGGGCTTCATGCTCCAATTCATTTCGACNNNNNNNNNNANNNNNAN
AGCACGAGGAAGCCGATGGAGGGATCGATGCAAATGCAGTGGAGCTAGCGGTGATGCAAGCCATCAAGAGCACTCCAGGA
AAATAGAGAACATTCATGTATATATATGTGTGTGTATATGCATGCTTGATCGAGCTGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis