Browse Element(s) Details


OsAffx.16924.1.S1_x_at

Description tigr:9636.m00920
TID=OsAffx.16924.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0966011/11hypothetical protein
LOC_Os01g541808/11hypothetical protein
LOC_Os05g271204/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09680NANA8+5586749..5587060hypothetical protein
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16924.1.S1_x_at--131--95312Chr08:5574279..5574303 (25 bp)
TCTCTTTTCTCTCTCAGATGGCGAG
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--177--3779Chr08:5574280..5574304 (25 bp)
CTCTTTTCTCTCTCAGATGGCGAGG
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--1095--9557Chr08:5574281..5574305 (25 bp)
TCTTTTCTCTCTCAGATGGCGAGGA
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--60--10395Chr08:5574283..5574307 (25 bp)
TTTTCTCTCTCAGATGGCGAGGACA
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--856--10312Chr08:5574284..5574308 (25 bp)
TTTCTCTCTCAGATGGCGAGGACAG
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--408--10594Chr08:5574285..5574309 (25 bp)
TTCTCTCTCAGATGGCGAGGACAGC
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--1112--9494Chr08:5574286..5574310 (25 bp)
TCTCTCTCAGATGGCGAGGACAGCG
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--475--3772Chr08:5574289..5574313 (25 bp)
CTCTCAGATGGCGAGGACAGCGGCC
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--445--5071Chr08:5574336..5574360 (25 bp)
GCAGCGGTGGACGAGTGCGCAGCCG
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--570--3391Chr08:5574337..5574361 (25 bp)
CAGCGGTGGACGAGTGCGCAGCCGG
LOC_Os08g09660
OsAffx.16924.1.S1_x_at--785--8111Chr08:5574344..5574368 (25 bp)
GGACGAGTGCGCAGCCGGCGGAGCC
LOC_Os08g09660
Target Sequence 
TCTCTTTTCTCTCTCAGATGGCGAGGACAGCGGCCGGCGGGGTGGAGCGGGGCAGCGGCAGCGGTGGACGAGTGCGCAGC
CGGCGGAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16924.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis