Browse Element(s) Details


OsAffx.5765.1.S1_at

Description tigr:9636.m00918
TID=OsAffx.5765.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=contains similarity to Medicago truncatula N7 protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0964011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09680NANA8+5586749..5587060hypothetical protein
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5765.1.S1_at--713--8911Chr08:5566242..5566266 (25 bp)
TGAGCTCTCATTCTGCTACAATGTT
LOC_Os08g09640
OsAffx.5765.1.S1_at--429--9911Chr08:5566218..5566242 (25 bp)
TACTCATGAGGCGTATGCGGCTATC
LOC_Os08g09640
OsAffx.5765.1.S1_at--851--1571Chr08:5566177..5566201 (25 bp)
AGCTCAAGCGCTTCAGGCTTAGCAA
LOC_Os08g09640
OsAffx.5765.1.S1_at--90--8291Chr08:5566162..5566186 (25 bp)
GGCTTAGCAAACGATCCTTCTATGA
LOC_Os08g09640
OsAffx.5765.1.S1_at--35--10331Chr08:5566093..5566117 (25 bp)
TTTCAAAGATGCACGGGCTACGCTC
LOC_Os08g09640
OsAffx.5765.1.S1_at--636--8551Chr08:5566000..5566024 (25 bp)
TGGAGTCTCTTGACATTCGCCATTG
LOC_Os08g09640
OsAffx.5765.1.S1_at--314--71Chr08:5565979..5566003 (25 bp)
ATTGCTTCAACATCGACATGGGCGC
LOC_Os08g09640
OsAffx.5765.1.S1_at--1011--7951Chr08:5565928..5565952 (25 bp)
GGATCAAGATGCTGAGGCCACCTGA
LOC_Os08g09640
OsAffx.5765.1.S1_at--886--871Chr08:5565914..5565938 (25 bp)
AGGCCACCTGATGACTCAACTGATG
LOC_Os08g09640
OsAffx.5765.1.S1_at--1079--671Chr08:5565886..5565910 (25 bp)
ATGACTTCGATGTGTACACTCCCAG
LOC_Os08g09640
OsAffx.5765.1.S1_at--294--7311Chr08:5565836..5565860 (25 bp)
GTGCGGTATTATTCGGTGTATTCTG
LOC_Os08g09640
Target Sequence 
TGAGCTCTCATTCTGCTACAATGTTACTCATGAGGCGTATGCGGCTATCGGCGCGGCATGCCCACAGCTCAAGCGCTTCA
GGCTTAGCAAACGATCCTTCTATGATTCAGGAGGTATCCGCTGGAAAAACAACGATGATGCTGGTGGAATTTCAAAGATG
CACGGGCTACGCTCCCTGCAGCTCTTCGCCAATAACCTCACAAATGAAGGTCTCTCAACCATCTTGGATAACTGCCCCAA
CCTGGAGTCTCTTGACATTCGCCATTGCTTCAACATCGACATGGGCGCCGACTCCCTGCGAGCAAAATGTAGCAGGATCA
AGATGCTGAGGCCACCTGATGACTCAACTGATGACTATGACTTCGATGTGTACACTCCCAGGAGGCTCCCCATCTCCCCC
GGTTTTGTGCGGTATTATTCGGTGTATTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis