Browse Element(s) Details


OsAffx.16920.1.S1_at

Description tigr:9636.m00913
TID=OsAffx.16920.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to contains similarity to Medicago truncatula N7 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0959011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09530NANA8+5518422..5519488retrotransposon protein, putative, unclassified
LOC_Os08g09540OsAffx.26082.3.S1_at11/118+5520324..5520755hypothetical protein
LOC_Os08g09550OsAffx.16919.1.S1_at11/118+5530257..5531530expressed protein
LOC_Os08g09560OsAffx.29119.1.S1_at11/118+5533835..5534212hypothetical protein
LOC_Os08g09570OsAffx.29120.1.S1_at11/118+5537421..5539547hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16920.1.S1_at--438--1311Chr08:5545193..5545217 (25 bp)
AGATGGTTCACCACGAGGCCCTGAG
LOC_Os08g09590
OsAffx.16920.1.S1_at--534--5871Chr08:5545215..5545239 (25 bp)
GAGCCTGAAGGAACCCATTGTCATG
LOC_Os08g09590
OsAffx.16920.1.S1_at--1139--8571Chr08:5545303..5545327 (25 bp)
TGGTTTGTTAACGATGGGCTGCTCA
LOC_Os08g09590
OsAffx.16920.1.S1_at--554--7571Chr08:5545318..5545342 (25 bp)
GGGCTGCTCAACTATATACGGGACA
LOC_Os08g09590
OsAffx.16920.1.S1_at--978--2671Chr08:5546427..5546451 (25 bp)
AAGCTGAAGCGCCTGTGCCTTGTCT
LOC_Os08g09590
OsAffx.16920.1.S1_at--221--4451Chr08:5546443..5546467 (25 bp)
GCCTTGTCTCATGCTACAGTGTCTA
LOC_Os08g09590
OsAffx.16920.1.S1_at--625--5411Chr08:5546472..5546496 (25 bp)
GAAGCGTTCATCGAGTTCATAGCAA
LOC_Os08g09590
OsAffx.16920.1.S1_at--531--531Chr08:5546517..5546541 (25 bp)
ATCGCCCTCATCAACTGTGGAAGTG
LOC_Os08g09590
OsAffx.16920.1.S1_at--1059--2851Chr08:5546537..5546561 (25 bp)
AAGTGTCGTCTTCCACGCTTTGAAT
LOC_Os08g09590
OsAffx.16920.1.S1_at--968--5451Chr08:5546608..5546632 (25 bp)
GAACGGCATTTGAGCGACCTTGTTA
LOC_Os08g09590
OsAffx.16920.1.S1_at--435--2811Chr08:5546771..5546795 (25 bp)
AAGGTCGTCGATGCTACGTACCCTG
LOC_Os08g09590
Target Sequence 
AGATGGTTCACCACGAGGCCCTGAGCCTGAAGGAACCCATTGTCATGTCCGAAATGGCTAGGGCGGCCGTGGACCGCTCT
GATGGCCGGCTTGAGGCGTTCGAGGGGCAGTGGTTTGTTAACGATGGGCTGCTCAACTATATACGGGACAGGTCACCGAA
GCTGAAGCGCCTGTGCCTTGTCTCATGCTACAGTGTCTACAAGGAAGCGTTCATCGAGTTCATAGCAAAGTGTCCGCTGA
TAGAGGACATCGCCCTCATCAACTGTGGAAGTGTCGTCTTCCACGCTTTGAATGTGATCACCGGAAAATCATTCCCGCAG
CTGAAGCGGTTCGAGCTACGAACGGCATTTGAGCGACCTTGTTACGGGTGCGATGTGCCGCTGGGGATTCCAACGGTGCG
CCACCTGCAACACCTGATTTTAGGGGGCATCATCGACATCGACAACGAAGAGCCCCCTGCCCTCACCTTGATCTTATTGG
CATCAGGGAGTGCTATGAGCTCAAGGTCGTCGATGCTACGTACCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16920.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis