Browse Element(s) Details


OsAffx.29120.1.S1_at

Description tigr:9636.m00911
TID=OsAffx.29120.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0957011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09520NANA8+5513536..5517050transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g09530NANA8+5518422..5519488retrotransposon protein, putative, unclassified
LOC_Os08g09540OsAffx.26082.3.S1_at11/118+5520324..5520755hypothetical protein
LOC_Os08g09550OsAffx.16919.1.S1_at11/118+5530257..5531530expressed protein
LOC_Os08g09560OsAffx.29119.1.S1_at11/118+5533835..5534212hypothetical protein
LOC_Os08g09570OsAffx.29120.1.S1_at11/118+5537421..5539547hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29120.1.S1_at--205--9811Chr08:5538977..5539001 (25 bp)
TAACATCTACCTCACCTGGTGGAAC
LOC_Os08g09570
OsAffx.29120.1.S1_at--724--951Chr08:5539018..5539042 (25 bp)
AGGACAAGCAACAACCCATGGCCAA
LOC_Os08g09570
OsAffx.29120.1.S1_at--681--3371Chr08:5539115..5539139 (25 bp)
CAGCCGCGATTCATACGTCGAGATG
LOC_Os08g09570
OsAffx.29120.1.S1_at--774--3811Chr08:5539167..5539191 (25 bp)
CTGCGGTACGACTCAACCGAGCAAT
LOC_Os08g09570
OsAffx.29120.1.S1_at--339--5951Chr08:5539185..5539209 (25 bp)
GAGCAATTGGCCAGCTTCCTACGGA
LOC_Os08g09570
OsAffx.29120.1.S1_at--723--6331Chr08:5539233..5539257 (25 bp)
GATGCTCGTGGTAGGCTACGACACA
LOC_Os08g09570
OsAffx.29120.1.S1_at--883--5611Chr08:5539252..5539276 (25 bp)
GACACAGGTACGGTTCCAACCTTGA
LOC_Os08g09570
OsAffx.29120.1.S1_at--532--4331Chr08:5539292..5539316 (25 bp)
CCATCTCCAGCTGGTTTTAGACACA
LOC_Os08g09570
OsAffx.29120.1.S1_at--487--4811Chr08:5539325..5539349 (25 bp)
GCTCGGTGCAAAGCTCATCAGCCAG
LOC_Os08g09570
OsAffx.29120.1.S1_at--883--7551Chr08:5539427..5539451 (25 bp)
GGGCCAGCAATGCAGCGCATATTCT
LOC_Os08g09570
OsAffx.29120.1.S1_at--423--9351Chr08:5539492..5539516 (25 bp)
TCGCTGCCCTCCTAGTGGAATACGT
LOC_Os08g09570
Target Sequence 
TAACATCTACCTCACCTGGTGGAACAAGAAGCAGCAGAAGCAGGACAAGCAACAACCCATGGCCAAGGCGGCCGAGGCGC
TCTCCAACTACATGATGTTCCTCCTCGCCGCACGCCCCTACATGCTGTCTCCCACTGCCAGCCGCGATTCATACGTCGAG
ATGGCCTACGCTCTCACCCCCGCCGGCGGCCTGCGGTACGACTCAACCGAGCAATTGGCCAGCTTCCTACGGACCTACGG
GGATACACCCGAGTATGATGCTCGTGGTAGGCTACGACACAGGTACGGTTCCAACCTTGATTTTACAACACAACACCATC
TCCAGCTGGTTTTAGACACAGGATGTGAGCTCGGTGCAAAGCTCATCAGCCAGGACGAGTTACAAGAGGCAGGGGCAGAC
GGCAAGCTAGGCCTCATCGCCCAAGTCTGGGTGGAGGTCTTGTGCCACGCGGGCCAGCAATGCAGCGCATATTCTCATGC
CCGGCAGCTCAGCAACGGCGGCGAGCTCATCACCGTCGCTGCCCTCCTAGTGGAATACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis