Browse Element(s) Details


OsAffx.5763.1.S1_x_at

Description tigr:9636.m00912
TID=OsAffx.5763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0958011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09530NANA8+5518422..5519488retrotransposon protein, putative, unclassified
LOC_Os08g09540OsAffx.26082.3.S1_at11/118+5520324..5520755hypothetical protein
LOC_Os08g09550OsAffx.16919.1.S1_at11/118+5530257..5531530expressed protein
LOC_Os08g09560OsAffx.29119.1.S1_at11/118+5533835..5534212hypothetical protein
LOC_Os08g09570OsAffx.29120.1.S1_at11/118+5537421..5539547hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5763.1.S1_x_at--1106--4091Chr08:5543539..5543563 (25 bp)
CGACGGCCAGCTTGAGGCGTTCATG
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--848--8191Chr08:5543510..5543534 (25 bp)
GGAAGTTTGTTAGCAATCAGCTCCT
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--872--5331Chr08:5543509..5543533 (25 bp)
GAAGTTTGTTAGCAATCAGCTCCTC
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--1028--1191Chr08:5543507..5543531 (25 bp)
AGTTTGTTAGCAATCAGCTCCTCAA
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--795--3071Chr08:5543496..5543520 (25 bp)
AATCAGCTCCTCAAGTACATAGCTG
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--42--9671Chr08:5543494..5543518 (25 bp)
TCAGCTCCTCAAGTACATAGCTGAC
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--687--4791Chr08:5543492..5543515 (24 bp)
GCTCCTCAAGTACATAGCTGACAGA
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--587--1171Chr08:5543188..5543507 (25 bp)
AGTACATAGCTGACAGAGGGCTGAT
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--273--9891Chr08:5543186..5543505 (25 bp)
TACATAGCTGACAGAGGGCTGATAT
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--523--291Chr08:5543183..5543502 (25 bp)
ATAGCTGACAGAGGGCTGATATACA
LOC_Os08g09580
OsAffx.5763.1.S1_x_at--657--8951Chr08:5543178..5543198 (21 bp)
TGACAGAGGGCTGATATACAACGGA
LOC_Os08g09580
Target Sequence 
CGACGGCCAGCTTGAGGCGTTCATGGGGAGGAAGTTTGTTAGCAATCAGCTCCTCAAGTACATAGCTGACAGAGGGCTGA
TATACAACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5763.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis