Browse Element(s) Details


OsAffx.5764.1.S1_at

Description tigr:9636.m00914
TID=OsAffx.5764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=nodulin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0960011/11root nodule development protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09550OsAffx.16919.1.S1_at11/118+5530257..5531530expressed protein
LOC_Os08g09560OsAffx.29119.1.S1_at11/118+5533835..5534212hypothetical protein
LOC_Os08g09570OsAffx.29120.1.S1_at11/118+5537421..5539547hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5764.1.S1_at--391--6831Chr08:5552395..5552419 (25 bp)
GTTTGTTACCAATAATCTCCTCACC
LOC_Os08g09600
OsAffx.5764.1.S1_at--474--2111Chr08:5552604..5552628 (25 bp)
ACAGGTCACCTTGTCTGAAGTGTCT
LOC_Os08g09600
OsAffx.5764.1.S1_at--319--2871Chr08:5552621..5552645 (25 bp)
AAGTGTCTTTACCTCGAGTCATGCA
LOC_Os08g09600
OsAffx.5764.1.S1_at--938--6091Chr08:5552636..5552660 (25 bp)
GAGTCATGCACAAGTGTCTCCAACA
LOC_Os08g09600
OsAffx.5764.1.S1_at--27--7431Chr08:5552649..5552673 (25 bp)
GTGTCTCCAACAAAGGACTCACCGA
LOC_Os08g09600
OsAffx.5764.1.S1_at--161--4231Chr08:5552670..5552694 (25 bp)
CCGAGCTCATCACGAAATGTCCGAT
LOC_Os08g09600
OsAffx.5764.1.S1_at--793--8931Chr08:5552706..5552730 (25 bp)
TGACGCTCTACAGCTGCAGAAATAT
LOC_Os08g09600
OsAffx.5764.1.S1_at--447--3211Chr08:5552758..5552782 (25 bp)
CAAGGCGTGCCGTCGCATGAAGCGT
LOC_Os08g09600
OsAffx.5764.1.S1_at--946--5631Chr08:5552865..5552889 (25 bp)
GACACCTGACGCTCGAAGGCATCGG
LOC_Os08g09600
OsAffx.5764.1.S1_at--187--8571Chr08:5552937..5552961 (25 bp)
TGGATCTCCTCCACGTGAGCGGGTG
LOC_Os08g09600
OsAffx.5764.1.S1_at--320--3951Chr08:5553007..5553031 (25 bp)
CGGCATCAAGTCGTTGACGCTTCGC
LOC_Os08g09600
Target Sequence 
GTTTGTTACCAATAATCTCCTCACCTATGTCGCAGACAGGTCACCTTGTCTGAAGTGTCTTTACCTCGAGTCATGCACAA
GTGTCTCCAACAAAGGACTCACCGAGCTCATCACGAAATGTCCGATGCTAGAGGACTTGACGCTCTACAGCTGCAGAAAT
ATCGACGGCGACGTCTTCGTGGTCGCCGGCAAGGCGTGCCGTCGCATGAAGCGTCTCCACGTACGCTGGTGCGGAGCGTT
ACCTGCCTACTTCGACGGCGACGAGCCGGTCGGGATCGCGACGATGCGCGAGCTGCGACACCTGACGCTCGAAGGCATCG
GCGTCAGCCAGGAGAAGCTGATGGCCATTGTCGATGGCTGCCCTCAGCTGGATCTCCTCCACGTGAGCGGGTGCCCCGGC
CTCGCCGCCGTCGACGACGCCCTGCAAGCCAAGTGCGCCGGCATCAAGTCGTTGACGCTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis