Browse Element(s) Details


OsAffx.16922.1.S1_at

Description tigr:9636.m00917
TID=OsAffx.16922.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0963011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09570OsAffx.29120.1.S1_at11/118+5537421..5539547hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09680NANA8+5586749..5587060hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16922.1.S1_at--1124--5951Chr08:5564580..5564604 (25 bp)
GAGAAGTGTGAGTCCTCGCGCATGC
LOC_Os08g09630
OsAffx.16922.1.S1_at--816--8271Chr08:5564642..5564666 (25 bp)
GGCATCTTGCGCACGCGCTGGCAGA
LOC_Os08g09630
OsAffx.16922.1.S1_at--455--8031Chr08:5564681..5564705 (25 bp)
GGAGGTGGCTACAAGCATCCTCACA
LOC_Os08g09630
OsAffx.16922.1.S1_at--193--571Chr08:5564697..5564721 (25 bp)
ATCCTCACACACGACAGTGTCGGTG
LOC_Os08g09630
OsAffx.16922.1.S1_at--436--6311Chr08:5564736..5564760 (25 bp)
GATGACGTGGCCAAAGCAGCTCTAG
LOC_Os08g09630
OsAffx.16922.1.S1_at--616--4811Chr08:5564754..5564778 (25 bp)
GCTCTAGTCATGAAGCTCGGCGAGA
LOC_Os08g09630
OsAffx.16922.1.S1_at--1026--5751Chr08:5564777..5564801 (25 bp)
GACGTGCTACGGCATCACTACTGGG
LOC_Os08g09630
OsAffx.16922.1.S1_at--1022--1051Chr08:5564817..5564841 (25 bp)
AGGGTCGCATTGGTGCAAGTTCGCT
LOC_Os08g09630
OsAffx.16922.1.S1_at--197--2831Chr08:5564833..5564857 (25 bp)
AAGTTCGCTGCTCCCATGTCGACAA
LOC_Os08g09630
OsAffx.16922.1.S1_at--160--771Chr08:5564848..5564872 (25 bp)
ATGTCGACAAGCAGTCGTCCGTCCC
LOC_Os08g09630
OsAffx.16922.1.S1_at--100--10731Chr08:5564896..5564920 (25 bp)
TTGCTGCCTGCTTCCTTGGAGATAG
LOC_Os08g09630
Target Sequence 
GAGAAGTGTGAGTCCTCGCGCATGCGCCGGAGGAGGCTGAGAAGGAGTGGCACAGGCTACGGGGCATCTTGCGCACGCGC
TGGCAGAGGCCAAGGAGGAGCGGAGGTGGCTACAAGCATCCTCACACACGACAGTGTCGGTGTGCGTGGTGGTGGAGATG
ACGTGGCCAAAGCAGCTCTAGTCATGAAGCTCGGCGAGACGTGCTACGGCATCACTACTGGGGAGGATGCGACGGAGAGG
GTCGCATTGGTGCAAGTTCGCTGCTCCCATGTCGACAAGCAGTCGTCCGTCCCCGTGCCGCCCGCCACCCTTTTCCTTGC
TGCCTGCTTCCTTGGAGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16922.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis