Browse Element(s) Details


OsAffx.16921.1.S1_at

Description tigr:9636.m00916
TID=OsAffx.16921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g096209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09570OsAffx.29120.1.S1_at11/118+5537421..5539547hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09680NANA8+5586749..5587060hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16921.1.S1_at--666--1131Chr08:5561723..5561747 (25 bp)
AGTGCGAGGCATTCCGGAGCCAGCA
LOC_Os08g09620
OsAffx.16921.1.S1_at--765--3591Chr08:5561714..5561738 (25 bp)
CATTCCGGAGCCAGCACGCCGTGGA
LOC_Os08g09620
OsAffx.16921.1.S1_at--334--10631NONE
TTCCTTGGCGAGACGTCACTAATTC
NONE
OsAffx.16921.1.S1_at--1007--4611NONE
GCGAGACGTCACTAATTCATCTGTT
NONE
OsAffx.16921.1.S1_at--46--10751Chr08:5559957..5559981 (25 bp)
TTGCACTTGCATTAGAATCATCTGT
LOC_Os08g09620
OsAffx.16921.1.S1_at--605--9611Chr08:5559940..5559964 (25 bp)
TCATCTGTTTTGATTTGTGGGCATG
LOC_Os08g09620
OsAffx.16921.1.S1_at--550--8671Chr08:5559925..5559949 (25 bp)
TGTGGGCATGGAATTCAAAAGCGAA
LOC_Os08g09620
OsAffx.16921.1.S1_at--665--3211Chr08:5559867..5559891 (25 bp)
CAAGGTGCATATGGGCGAGGTCATC
LOC_Os08g09620
OsAffx.16921.1.S1_at--1155--4611Chr08:5559853..5559877 (25 bp)
GCGAGGTCATCAATCATCAGACTGA
LOC_Os08g09620
OsAffx.16921.1.S1_at--28--411Chr08:5559838..5559862 (25 bp)
ATCAGACTGATCGTAGCCGTCGCAT
LOC_Os08g09620
OsAffx.16921.1.S1_at--580--9991Chr08:5559825..5559849 (25 bp)
TAGCCGTCGCATCTGTCATAACAGT
LOC_Os08g09620
Target Sequence 
AGTGCGAGGCATTCCGGAGCCAGCACGCCGTGGACGACGGCTTCCTCCTCTTCCTTGGCGAGACGTCACTAATTCATCTG
TTTTGCACTTGCATTAGAATCATCTGTTTTGATTTGTGGGCATGGAATTCAAAAGCGAAGTCTGATCAAACAAACAGATC
ATCATCACAATGCAAGGTGCATATGGGCGAGGTCATCAATCATCAGACTGATCGTAGCCGTCGCATCTGTCATAACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis