Browse Element(s) Details


Os.50702.1.S1_at

Description gb:BX897992
DB_XREF= gi:40486492
DB_XREF=BX897992
CLONE=p657b12p5
TID=Os.50702.1
CNT=3
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50702 (NCBI UniGene Cluster)
UG_TITLE=Z243 snoRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0967011/11N7 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative
LOC_Os08g09610Os.7582.1.S1_at11/118+5556911..5558078expressed protein
LOC_Os08g09620OsAffx.16921.1.S1_at9/118+5559777..5561781hypothetical protein
LOC_Os08g09630OsAffx.16922.1.S1_at11/118+5564535..5564990hypothetical protein
LOC_Os08g09640OsAffx.5765.1.S1_at11/118+5565687..5568040F-box domain containing protein
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09680NANA8+5586749..5587060hypothetical protein
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50702.1.S1_at--688--7351Chr08:5578111..5578135 (25 bp)
GTGAAGTGCTTAGATGCTCGCCTTT
LOC_Os08g09670
Os.50702.1.S1_at--1150--4431Chr08:5578092..5578116 (25 bp)
GCCTTTTTCGCTCAACTCTCTGAAG
LOC_Os08g09670
Os.50702.1.S1_at--518--2531Chr08:5578079..5578103 (25 bp)
AACTCTCTGAAGCTCGCGTTGCATG
LOC_Os08g09670
Os.50702.1.S1_at--661--4991Chr08:5578059..5578083 (25 bp)
GCATGTCCCATGTCTGTCAATTGAT
LOC_Os08g09670
Os.50702.1.S1_at--401--2631Chr08:5578028..5578052 (25 bp)
AACCTATGGTACTCCAGTTCTCAGA
LOC_Os08g09670
Os.50702.1.S1_at--48--6731Chr08:5578012..5578036 (25 bp)
GTTCTCAGAAAGTACCGGCAGTCTT
LOC_Os08g09670
Os.50702.1.S1_at--591--3931Chr08:5577997..5578021 (25 bp)
CGGCAGTCTTTTACTCGGTAGTAGT
LOC_Os08g09670
Os.50702.1.S1_at--318--6951Chr08:5577977..5578001 (25 bp)
GTAGTTTTCATATTGCTTGAGGACG
LOC_Os08g09670
Os.50702.1.S1_at--286--6191Chr08:5577959..5577983 (25 bp)
GAGGACGATATTCAAGCTCATATTA
LOC_Os08g09670
Os.50702.1.S1_at--877--4811Chr08:5577944..5577968 (25 bp)
GCTCATATTAGTTTCGTTAAGGCTT
LOC_Os08g09670
Os.50702.1.S1_at--872--10211Chr08:5577910..5577934 (25 bp)
TATTCAGGTACTTATATTGGTCAGT
LOC_Os08g09670
Target Sequence 
GTGAAGTGCTTAGATGCTCGCCTTTTTCGCTCAACTCTCTGAAGCTCGCGTTGCATGTCCCATGTCTGTCAATTGATAGT
TTGAACCTATGGTACTCCAGTTCTCAGAAAGTACCGGCAGTCTTTTACTCGGTAGTAGTTTTCATATTGCTTGAGGACGA
TATTCAAGCTCATATTAGTTTCGTTAAGGCTTAAAAGACAATATTCAGGTACTTATATTGGTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis