Browse Element(s) Details


OsAffx.16919.1.S1_at

Description tigr:9636.m00909
TID=OsAffx.16919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0955011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09510Os.46012.2.S1_x_at11/118+5503505..5509236retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g09510Os.46012.3.S1_x_at7/118+5503505..5509236retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g09510Os.27088.1.A1_x_at5/118+5503505..5509236retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g09510Os.54691.1.S1_x_at1/118+5503505..5509236retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g09520NANA8+5513536..5517050transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g09530NANA8+5518422..5519488retrotransposon protein, putative, unclassified
LOC_Os08g09540OsAffx.26082.3.S1_at11/118+5520324..5520755hypothetical protein
LOC_Os08g09550OsAffx.16919.1.S1_at11/118+5530257..5531530expressed protein
LOC_Os08g09560OsAffx.29119.1.S1_at11/118+5533835..5534212hypothetical protein
LOC_Os08g09570OsAffx.29120.1.S1_at11/118+5537421..5539547hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein
LOC_Os08g09600OsAffx.5764.1.S1_at11/118+5552336..5553061root nodule development protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16919.1.S1_at--22--3571Chr08:5530796..5530973 (25 bp)
CATCAATTACAGATCTAGTACTATC
LOC_Os08g09550
OsAffx.16919.1.S1_at--480--1171Chr08:5530780..5530804 (25 bp)
AGTACTATCTGAATATCAACTAAGA
LOC_Os08g09550
OsAffx.16919.1.S1_at--455--2711Chr08:5530641..5530760 (25 bp)
AAGCATCAAATCCAGGTGAGTGCAC
LOC_Os08g09550
OsAffx.16919.1.S1_at--494--371Chr08:5530637..5530756 (25 bp)
ATCAAATCCAGGTGAGTGCACAAAA
LOC_Os08g09550
OsAffx.16919.1.S1_at--63--7771Chr08:5530627..5530651 (25 bp)
GGTGAGTGCACAAAAACAAACATAC
LOC_Os08g09550
OsAffx.16919.1.S1_at--1139--6511Chr08:5530573..5530595 (23 bp)
GATTTGGATACATCAATTACCGGAC
LOC_Os08g09550
OsAffx.16919.1.S1_at--1016--6471Chr08:5530401..5530589 (25 bp)
GATACATCAATTACCGGACTCACAT
LOC_Os08g09550
OsAffx.16919.1.S1_at--407--371Chr08:5530396..5530584 (25 bp)
ATCAATTACCGGACTCACATAGACA
LOC_Os08g09550
OsAffx.16919.1.S1_at--511--131Chr08:5530392..5530580 (25 bp)
ATTACCGGACTCACATAGACATGTA
LOC_Os08g09550
OsAffx.16919.1.S1_at--952--8111Chr08:5530386..5530410 (25 bp)
GGACTCACATAGACATGTAATTTAT
LOC_Os08g09550
OsAffx.16919.1.S1_at--972--9871Chr08:5530359..5530383 (25 bp)
TACATTTTCACTACAATTACATGAG
LOC_Os08g09550
Target Sequence 
CATCAATTACAGATCTAGTACTATCTGAATATCAACTAAGAAGAATTGATATGATCAAAAAAGCATCAAATCCAGGTGAG
TGCACAAAAACAAACATACAATTGAAAATGAAGAAGCAGATAAAAGCAATGATTTGGATACATCAATTACCGGACTCACA
TAGACATGTAATTTATAATACATTTTCACTACAATTACATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis