Browse Element(s) Details


OsAffx.26082.3.S1_at

Description tigr:9636.m00908
TID=OsAffx.26082.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0954011/11hypothetical protein
LOC_Os04g078404/11retrotransposon protein, putative, unclassified
LOC_Os08g109004/11retrotransposon protein, putative, unclassified
LOC_Os12g163302/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09500NANA8+5492110..5497626retrotransposon protein, putative, unclassified
LOC_Os08g09510Os.46012.2.S1_x_at11/118+5503505..5509236retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g09510Os.46012.3.S1_x_at7/118+5503505..5509236retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g09510Os.27088.1.A1_x_at5/118+5503505..5509236retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g09510Os.54691.1.S1_x_at1/118+5503505..5509236retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g09520NANA8+5513536..5517050transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g09530NANA8+5518422..5519488retrotransposon protein, putative, unclassified
LOC_Os08g09540OsAffx.26082.3.S1_at11/118+5520324..5520755hypothetical protein
LOC_Os08g09550OsAffx.16919.1.S1_at11/118+5530257..5531530expressed protein
LOC_Os08g09560OsAffx.29119.1.S1_at11/118+5533835..5534212hypothetical protein
LOC_Os08g09570OsAffx.29120.1.S1_at11/118+5537421..5539547hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09580OsAffx.5763.1.S1_x_at11/118+5543148..5543613hypothetical protein
LOC_Os08g09590OsAffx.16920.1.S1_at11/118+5544411..5546849F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26082.3.S1_at--20--3551Chr08:5520524..5520548 (25 bp)
CATCGCGCATTATTTGATCAGTCTG
LOC_Os08g09540
OsAffx.26082.3.S1_at--43--9352Chr09:4829162..4829181 (20 bp)
TCGCGCATTATTTGATCAGTCTGGA
NONE
OsAffx.26082.3.S1_at--531--4131Chr08:5520519..5520543 (25 bp)
CGCATTATTTGATCAGTCTGGAGTT
LOC_Os08g09540
OsAffx.26082.3.S1_at--883--3454Chr12:20253060..20253082 (23 bp)
CAGTCTGGAGTTTTGATGAGTACAC
NONE
OsAffx.26082.3.S1_at--659--8034Chr12:20253065..20253373 (25 bp)
GGAGTTTTGATGAGTACACTACAAG
NONE
OsAffx.26082.3.S1_at--1023--6293Chr08:17562155..17562179 (25 bp)
GATGAGTACACTACAAGATGTGATC
NONE
OsAffx.26082.3.S1_at--94--8694Chr12:9338073..9338097 (25 bp)
TGTGATCAAGAAGATAGTTCCTGAA
LOC_Os12g16330
OsAffx.26082.3.S1_at--846--6492Chr12:9338085..9338109 (25 bp)
GATAGTTCCTGAAATAGTTGCTCAA
LOC_Os12g16330
OsAffx.26082.3.S1_at--341--2812Chr02:7698540..7698559 (20 bp)
AAGATTCAGCTCGAGGGGCAAGCAT
NONE
OsAffx.26082.3.S1_at--864--1054Chr02:7698548..7698572 (25 bp)
AGGGGCAAGCATATCAATATCGGCC
NONE
OsAffx.26082.3.S1_at--630--1433Chr02:7698576..7698600 (25 bp)
AGAACTTCGTCAATATGGGCATGAT
NONE
Target Sequence 
CATCGCGCATTATTTGATCAGTCTGGAGTTTTGATGAGTACACTACAAGATGTGATCAAGAAGATAGTTCCTGAAATAGT
TGCTCAAAAGATTCAGCTCGAGGGGCAAGCATATCAATATCGGCCAGAAGAACTTCGTCAATATGGGCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26082.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis