Browse Element(s) Details


Os.34819.3.S1_x_at

Description gb:CF336125
DB_XREF= gi:33820624
DB_XREF=JMT--06-B03.g1
CLONE=JMT--06-B03
TID=Os.34819.3
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1723_B06.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2249411/11expressed protein
LOC_Os05g271101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22460OsAffx.22631.1.S1_at11/117+12627098..12627685hypothetical protein
LOC_Os07g22470OsAffx.21042.1.S1_at11/117+12630712..12632412hypothetical protein
LOC_Os07g22480OsAffx.22629.1.S1_at11/117+12639753..12644850hypothetical protein
LOC_Os07g22480OsAffx.30013.5.S1_x_at1/117+12639753..12644850hypothetical protein
LOC_Os07g22494Os.33350.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494OsAffx.5404.1.S1_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_s_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_x_at8/117+12651670..12654761expressed protein
LOC_Os07g22494Os.33350.1.S1_x_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_s_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_x_at2/117+12651670..12654761expressed protein
LOC_Os07g22494Os.42141.1.S1_x_at1/117+12651670..12654761expressed protein
LOC_Os07g22510Os.30411.1.S1_at11/117+12663580..12664674expressed protein
LOC_Os07g22520OsAffx.22628.1.S1_at11/117+12666279..12668588hypothetical protein
LOC_Os07g22534Os.30694.3.S1_x_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.1.S1_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.2.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534OsAffx.22627.1.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.7923.1.S1_x_at6/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.32421.1.A1_at1/117+12674396..12682626WD-repeat protein 18, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34819.3.S1_x_at--223--4291Chr07:12654612..12654636 (25 bp)
CCTCCACAACATCCTGGACATGGAT
LOC_Os07g22494
Os.34819.3.S1_x_at--122--2511Chr07:12654605..12654629 (25 bp)
AACATCCTGGACATGGATCCTCTAC
LOC_Os07g22494
Os.34819.3.S1_x_at--492--8532Chr07:12654598..12654622 (25 bp)
TGGACATGGATCCTCTACCTTTGGC
LOC_Os07g22494
Os.34819.3.S1_x_at--809--832Chr07:12654593..12654617 (25 bp)
ATGGATCCTCTACCTTTGGCTCGCC
LOC_Os07g22494
Os.34819.3.S1_x_at--512--7551Chr07:12654559..12654583 (25 bp)
GGGCCACCAGACTGCCAGCGATGAG
LOC_Os07g22494
Os.34819.3.S1_x_at--847--3531Chr07:12654343..12654475 (25 bp)
CATCCCTCCACTGGTTAGTGAAGAA
LOC_Os07g22494
Os.34819.3.S1_x_at--106--8931Chr07:12653536..12653560 (25 bp)
TGAGCCACCCAGTACAACACAACTA
LOC_Os07g22494
Os.34819.3.S1_x_at--752--4391Chr07:12653533..12653557 (25 bp)
GCCACCCAGTACAACACAACTAAAA
LOC_Os07g22494
Os.34819.3.S1_x_at--1141--1671Chr07:12653326..12653350 (25 bp)
AGCCATCATAGGCATCACCTCAAAG
LOC_Os07g22494
Os.34819.3.S1_x_at--542--8271Chr07:12653316..12653340 (25 bp)
GGCATCACCTCAAAGACATTCTACT
LOC_Os07g22494
Os.34819.3.S1_x_at--1088--9692Chr07:12653307..12653331 (25 bp)
TCAAAGACATTCTACTCACTGCAAA
LOC_Os07g22494
Target Sequence 
CCTCCACAACATCCTGGACATGGATCCTCTACCTTTGGCTCGCCNGAGCAATGGGGCCACCAGACTGCCAGCGATGAGTC
CGGGGGCATCCAGATCCAGCGCCACCTCACCCATGGCAGCTGCTCCGGNGCGACGATGGCCAGGGGCCGCGCTGCCCTCC
TCATCCCTCCACTGGTTAGTGAAGAAGTTGGGTGAAGAAGGACCCGGGCAAGACTTNCATGCTAGCTGCCTCTCCATGNN
NNANNNNNNGNNNNNNNTNNNNNNTNNNNNNNATNNNNNNNNTNNTNTNNNTNNNGANTNNTTCCATGAGCCACCCAGTA
CAACACAACTAAAATCATATGGAANNNTTGGAGCCATGTTCCAAGAAGTCATTCCAAAATTGCAATGTCTGTTCCAGTAC
TGAACCAATCCAGCTCGGCTCCATTTCAAGCCATCATAGGCATCACCTCAAAGACATTCTACTCACTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34819.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis