Browse Element(s) Details


OsAffx.27035.1.S1_at

Description tigr:9633.m02465
TID=OsAffx.27035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2716010/11hypothetical protein
LOC_Os02g197801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27110Os.5530.2.S1_s_at11/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.2.S1_a_at8/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.2.S1_x_at7/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.42141.1.S1_x_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110OsAffx.5404.1.S1_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.3.S1_x_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.34819.3.S1_x_at1/115+15699189..15700298hypothetical protein
LOC_Os05g27120OsAffx.21629.2.S1_x_at11/115+15701305..15701847hypothetical protein
LOC_Os05g27120OsAffx.16924.1.S1_x_at4/115+15701305..15701847hypothetical protein
LOC_Os05g27130Os.47463.1.S1_x_at3/115+15711182..15712171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27130Os.14491.2.S1_x_at3/115+15711182..15712171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27140Os.14491.2.S1_x_at4/115+15714170..15718937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27140Os.47463.1.S1_x_at3/115+15714170..15718937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27150NANA5+15720344..15722614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27160OsAffx.27035.1.S1_at10/115+15724296..15724730hypothetical protein
LOC_Os05g27170NANA5+15729056..15732922Transposable element protein, putative, Retrotrans_gag
LOC_Os05g27180NANA5+15733558..15734058hypothetical protein
LOC_Os05g27190Os.27102.1.S1_x_at1/115+15736617..15737295hypothetical protein
LOC_Os05g27200Os.19105.1.S1_at1/115+15739606..15743381hypothetical protein
LOC_Os05g27200OsAffx.21595.1.S1_x_at1/115+15739606..15743381hypothetical protein
LOC_Os05g27210NANA5+15746339..15747697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g27220NANA5+15748116..15750183retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27035.1.S1_at--79--5051Chr05:15724332..15724356 (25 bp)
GCAGACGCCACTGGTGCAGGCCTAG
LOC_Os05g27160
OsAffx.27035.1.S1_at--572--1391Chr05:15724334..15724358 (25 bp)
AGACGCCACTGGTGCAGGCCTAGAG
LOC_Os05g27160
OsAffx.27035.1.S1_at--784--4391Chr05:15724338..15724362 (25 bp)
GCCACTGGTGCAGGCCTAGAGGCAA
LOC_Os05g27160
OsAffx.27035.1.S1_at--878--9012Chr05:15724365..15724389 (25 bp)
TGCAAGGGAGTGGTGGCAGTGCAAA
LOC_Os05g27160
OsAffx.27035.1.S1_at--854--5891NONE
GAGCTGGCAGCGGTTTTCCTTTGGC
NONE
OsAffx.27035.1.S1_at--1104--5031Chr05:15724398..15724566 (25 bp)
GCAGCGGTTTTCCTTTGGCCAAAAT
LOC_Os05g27160
OsAffx.27035.1.S1_at--68--5191Chr05:15724627..15724651 (25 bp)
GCAAGGTGCTGCAACATGTGTGGAA
LOC_Os05g27160
OsAffx.27035.1.S1_at--1121--7771Chr05:15724631..15724655 (25 bp)
GGTGCTGCAACATGTGTGGAAGTCT
LOC_Os05g27160
OsAffx.27035.1.S1_at--46--4771Chr05:15724634..15724658 (25 bp)
GCTGCAACATGTGTGGAAGTCTGTC
LOC_Os05g27160
OsAffx.27035.1.S1_at--480--3271Chr05:15724638..15724662 (25 bp)
CAACATGTGTGGAAGTCTGTCGGTG
LOC_Os05g27160
OsAffx.27035.1.S1_at--303--8171Chr05:15724648..15724672 (25 bp)
GGAAGTCTGTCGGTGGAGGTGTGCC
LOC_Os05g27160
Target Sequence 
GCAGACGCCACTGGTGCAGGCCTAGAGGCAAGGTGCAAGGGAGTGGTGGCAGTGCAAAGGGAGCTGGCAGCGGTTTTCCT
TTGGCCAAAATTGGTGAGGAGGCCAGCGGGTGGTGGGACAGAGGAGTCCTGGGCCAGCTCTAGGGGTGGCGGCAAGGTGC
TGCAACATGTGTGGAAGTCTGTCGGTGGAGGTGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis