Browse Element(s) Details


Os.19105.1.S1_at

Description gb:AK066512.1
DB_XREF= gi:32976530
TID=Os.19105.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19105 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068C19, full insert sequence.
FL= gb:AK066512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3112011/11beta scruin, putative, expressed
LOC_Os08g176701/11hypothetical protein
LOC_Os05g272001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31080OsAffx.19542.3.S1_x_at10/114+18390485..18394720retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31090Os.52823.1.S1_at9/114+18402286..18406681hypothetical protein
LOC_Os04g31090OsAffx.14062.1.S1_at7/114+18402286..18406681hypothetical protein
LOC_Os04g31090Os.17370.1.S1_x_at1/114+18402286..18406681hypothetical protein
LOC_Os04g31100NANA4+18408145..18408402hypothetical protein
LOC_Os04g31110Os.24608.1.S1_at11/114+18411480..18414039expressed protein
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein
LOC_Os04g31150OsAffx.14063.1.S1_at11/114+18432518..18432968hypothetical protein
LOC_Os04g31160OsAffx.14064.1.S1_at10/114+18441403..18445020hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19105.1.S1_at--901--6551Chr04:18420894..18420918 (25 bp)
GATTAGCATGAACTAGCATTCTAGG
LOC_Os04g31120
Os.19105.1.S1_at--475--9871Chr04:18420827..18420851 (25 bp)
TACTCCTAGTCCCTAAAGGCTTTGA
LOC_Os04g31120
Os.19105.1.S1_at--5--5592Chr11:25992524..25992663 (24 bp)
GAAATTTCTAGCGTACTCCCTCCGT
NONE
Os.19105.1.S1_at--362--8171Chr04:18420687..18420711 (25 bp)
GGAACATATGTATACCCAGATTCGT
LOC_Os04g31120
Os.19105.1.S1_at--953--27512Chr09:19219637..19219659 (22 bp)
AAGACTAGATATGTCACATCCGGTA
NONE
Os.19105.1.S1_at--59--6091Chr04:18420610..18420634 (25 bp)
GAGTATGTGCTAACGATATCCTAAC
LOC_Os04g31120
Os.19105.1.S1_at--457--3871Chr04:18420539..18420563 (25 bp)
CTGTCAACTTCAATGTGACGCTGAA
LOC_Os04g31120
Os.19105.1.S1_at--211--10171Chr04:18420445..18420469 (25 bp)
TATCATGTCTAGAACTTCCAGCTCA
LOC_Os04g31120
Os.19105.1.S1_at--1045--1571Chr04:18420426..18420450 (25 bp)
AGCTCATGAGCTTTAACTGCCTATT
LOC_Os04g31120
Os.19105.1.S1_at--365--4451Chr04:18420408..18420432 (25 bp)
GCCTATTGTTGGGTGATTTCTAATA
LOC_Os04g31120
Os.19105.1.S1_at--772--3071Chr04:18420380..18420404 (25 bp)
AATCACCCAGATTTTTTCAACTCTT
LOC_Os04g31120
Target Sequence 
GATTAGCATGAACTAGCATTCTAGGAAAACCATTCTAGTAGTATGTTTTATGGTGTAAATTGTTAATTACTCCTAGTCCC
TAAAGGCTTTGACATGAATACAATCAGTAAAGCATCATGGTGAGCANAAGAAATTTCTAGCGTACTCCCTCCGTCCCGTA
AAAAACGAATCTAGAACTAGATATGACATATTCTAATACTACGAATCTGGAACATATGTATACCCAGATTCGTAAGACTA
GATATGTCACATCCGGTATTAAGTTGATTTTTTATGTAACANGANGGAGTATGTGCTAACGATATCCTAACANATCNAAA
ATGGTAAAAAAAAATATANTTATTAATTTAACTATCCNCTGTCAACTTCAATGTGACGCTGAAAAAAATTAAAAGTACGA
AATTTTGAAACAATAATATTATTATATTAGTTTTATGAAAATGATATCGGTATATCATGTCTAGAACTTCCAGCTCATGA
GCTTTAACTGCCTATTGTTGGGTGATTTCTAATAAAAAATCACCCAGATTTTTTCAACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis