Browse Element(s) Details


OsAffx.14062.1.S1_at

Description tigr:9632.m02952
TID=OsAffx.14062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g310907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31080OsAffx.19542.3.S1_x_at10/114+18390485..18394720retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31090Os.52823.1.S1_at9/114+18402286..18406681hypothetical protein
LOC_Os04g31090OsAffx.14062.1.S1_at7/114+18402286..18406681hypothetical protein
LOC_Os04g31090Os.17370.1.S1_x_at1/114+18402286..18406681hypothetical protein
LOC_Os04g31100NANA4+18408145..18408402hypothetical protein
LOC_Os04g31110Os.24608.1.S1_at11/114+18411480..18414039expressed protein
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14062.1.S1_at--411--4931NONE
GCTTGGCTCGCAAGACGCGCTAAAG
NONE
OsAffx.14062.1.S1_at--231--1371Chr04:18405805..18405829 (25 bp)
AGACGCGCTAAAGAAGAACCTTTCT
LOC_Os04g31090
OsAffx.14062.1.S1_at--49--1451Chr04:18405791..18405815 (25 bp)
AGAACCTTTCTCCTGTCAGAAAAAG
LOC_Os04g31090
OsAffx.14062.1.S1_at--1117--9451Chr04:18405757..18405781 (25 bp)
TCTGGACTTCCTTATTCTTTATGCC
LOC_Os04g31090
OsAffx.14062.1.S1_at--1129--10211Chr04:18405748..18405769 (22 bp)
TATTCTTTATGCCAATATGTCGCTG
LOC_Os04g31090
OsAffx.14062.1.S1_at--236--4391NONE
CCAATATGTCGCTGGCTGGCATACA
NONE
OsAffx.14062.1.S1_at--608--111Chr04:18404177..18404375 (25 bp)
ATTCAAGACAAGGTCAGAGATTGGA
LOC_Os04g31090
OsAffx.14062.1.S1_at--464--631NONE
ATGACCCAGGGCAGGGATTTAGGGA
NONE
OsAffx.14062.1.S1_at--911--11Chr04:18403288..18403312 (25 bp)
ATTTAGGGAGGTGATCATCGTTTTA
LOC_Os04g31090
OsAffx.14062.1.S1_at--1162--9811Chr04:18403012..18403239 (25 bp)
TTTGATAAAGGGTCTTACAACAAAG
LOC_Os04g31090
OsAffx.14062.1.S1_at--411--6691NONE
GTTGCCTACAAACTGTTCTCTTCTT
NONE
Target Sequence 
GCTTGGCTCGCAAGACGCGCTAAAGAAGAACCTTTCTCCTGTCAGAAAAAGAAGAACCTTTCTGGACTTCCTTATTCTTT
ATGCCAATATGTCGCTGGCTGGCATACATGGTGATATATACGCCTCTCCCAGGGACCATATATGTGCTTCTCTGCATAAC
TGGGCTCTGCCAATAGCTGACCCACTATTCAAGACAAGGTCAGAGATTGGAGTTGGTCTCTTTTCAAGTGACTTTGATGA
GTCTGATGACCCAGGGCAGGGATTTAGGGAGGTGATCATCGTTTTAATCTTCTACTTGGAATTCTTTTACAAGTATCTCT
TTAAATTGAAAGATTTTGATAAAGGGTCTTACAACAAAGATATGATCTGGTGGTCTACTGAAGGAACCATTATTCAGTGT
TGCCTACAAACTGTTCTCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis