Browse Element(s) Details


Os.15607.1.S1_at

Description gb:AK120132.1
DB_XREF= gi:37989755
TID=Os.15607.1
CNT=75
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.15607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013027B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027B10, full insert sequence.
FL= gb:AK120132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3112011/11beta scruin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31080OsAffx.19542.3.S1_x_at10/114+18390485..18394720retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31090Os.52823.1.S1_at9/114+18402286..18406681hypothetical protein
LOC_Os04g31090OsAffx.14062.1.S1_at7/114+18402286..18406681hypothetical protein
LOC_Os04g31090Os.17370.1.S1_x_at1/114+18402286..18406681hypothetical protein
LOC_Os04g31100NANA4+18408145..18408402hypothetical protein
LOC_Os04g31110Os.24608.1.S1_at11/114+18411480..18414039expressed protein
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein
LOC_Os04g31150OsAffx.14063.1.S1_at11/114+18432518..18432968hypothetical protein
LOC_Os04g31160OsAffx.14064.1.S1_at10/114+18441403..18445020hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15607.1.S1_at--744--5371Chr04:18415853..18415877 (25 bp)
GAAGAACCAGCGGTCACTCGCGATC
LOC_Os04g31120
Os.15607.1.S1_at--291--9711Chr04:18415827..18415851 (25 bp)
TCAACCCTTCAGACAGTTCATGGCA
LOC_Os04g31120
Os.15607.1.S1_at--32--1231Chr04:18415813..18415837 (25 bp)
AGTTCATGGCAGAAGATCCCGGTGC
LOC_Os04g31120
Os.15607.1.S1_at--604--2771Chr04:18415713..18415737 (25 bp)
AAGAGCCTGGGTATCAGACTCTGAT
LOC_Os04g31120
Os.15607.1.S1_at--825--5711Chr04:18415697..18415721 (25 bp)
GACTCTGATGTATGATCCGACCGCG
LOC_Os04g31120
Os.15607.1.S1_at--1035--4551Chr04:18415675..18415699 (25 bp)
GCGCCTGCGGGATCTGAATGGCACA
LOC_Os04g31120
Os.15607.1.S1_at--842--9451Chr04:18415663..18415687 (25 bp)
TCTGAATGGCACACGTCGACGCTCA
LOC_Os04g31120
Os.15607.1.S1_at--532--4731Chr04:18415628..18415652 (25 bp)
GCTGTGCTTATGCAGTGTGACCATT
LOC_Os04g31120
Os.15607.1.S1_at--798--6651Chr04:18415599..18415623 (25 bp)
GTTGATGTCATCAGTAGGCATAGAT
LOC_Os04g31120
Os.15607.1.S1_at--433--9571Chr04:18415425..18415449 (25 bp)
TCTTCTGGAACTCTGTTTATATGTG
LOC_Os04g31120
Os.15607.1.S1_at--1160--9971Chr04:18415379..18415403 (25 bp)
TAGCCACAAGCATGCACTCAATTCG
LOC_Os04g31120
Target Sequence 
GAAGAACCAGCGGTCACTCGCGATCTTCAACCCTTCAGACAGTTCATGGCAGAAGATCCCGGTGCCGCTTACCGGTAGCT
CANGCCACTCTGTTCAGCCTTGGGGTGCTTGATGGGAAGCTGCTGCTGTTTTNCCCAGGAGGAAGAGCCTGGGTATCAGA
CTCTGATGTATGATCCGACCGCGCCTGCGGGATCTGAATGGCACACGTCGACGCTCAAGCCATCAGGGCTGTGCTTATGC
AGTGTGACCATTGAAAGTTGATGTCATCAGTAGGCATAGATTGTACTTNCTCCGTCCCATAAAAAACAAATCTAGAATTA
TATGTGACATATTCTAGTACAACGAACCTGGACGGAGTCACGTCCAATCTAGGTTTGTTTTCTGTGGGACAGANGGGAGT
ATATATTTCTTGCATTCTAGTGTCTATATGTTCTTCTGGAACTCTGTTTATATGTGATTCTCTGTTCAGNTTATTCCTAG
CCACAAGCATGCACTCAATTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis