Browse Element(s) Details


OsAffx.26265.1.S1_at

Description tigr:9632.m02959
TID=OsAffx.26265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3113011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31090Os.52823.1.S1_at9/114+18402286..18406681hypothetical protein
LOC_Os04g31090OsAffx.14062.1.S1_at7/114+18402286..18406681hypothetical protein
LOC_Os04g31090Os.17370.1.S1_x_at1/114+18402286..18406681hypothetical protein
LOC_Os04g31100NANA4+18408145..18408402hypothetical protein
LOC_Os04g31110Os.24608.1.S1_at11/114+18411480..18414039expressed protein
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein
LOC_Os04g31150OsAffx.14063.1.S1_at11/114+18432518..18432968hypothetical protein
LOC_Os04g31160OsAffx.14064.1.S1_at10/114+18441403..18445020hypothetical protein
LOC_Os04g31170OsAffx.26266.1.S1_at11/114+18450202..18455962expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26265.1.S1_at--988--9291Chr04:18427587..18427611 (25 bp)
TCCGCATCCTCTGACGTCGAGGAAG
LOC_Os04g31130
OsAffx.26265.1.S1_at--82--5751Chr04:18427575..18427599 (25 bp)
GACGTCGAGGAAGCCCGTGGCAACA
LOC_Os04g31130
OsAffx.26265.1.S1_at--282--5911Chr04:18427521..18427545 (25 bp)
GAGCTCGAGCGCCACTGTGACCAAG
LOC_Os04g31130
OsAffx.26265.1.S1_at--50--1671Chr04:18427514..18427538 (25 bp)
AGCGCCACTGTGACCAAGGGATCAA
LOC_Os04g31130
OsAffx.26265.1.S1_at--437--5831Chr04:18427503..18427527 (25 bp)
GACCAAGGGATCAAAACACGTGTAT
LOC_Os04g31130
OsAffx.26265.1.S1_at--379--1911Chr04:18427486..18427510 (25 bp)
ACGTGTATACGGTAGGCTCATGGCT
LOC_Os04g31130
OsAffx.26265.1.S1_at--552--851Chr04:18427467..18427491 (25 bp)
ATGGCTTATGATACACGGTGGGTTC
LOC_Os04g31130
OsAffx.26265.1.S1_at--455--2751Chr04:18427442..18427466 (25 bp)
AAGAACTCCCATCTGTCTTATGGGC
LOC_Os04g31130
OsAffx.26265.1.S1_at--756--791Chr04:18427423..18427447 (25 bp)
ATGGGCCATACGCACTACACTGACT
LOC_Os04g31130
OsAffx.26265.1.S1_at--752--2011Chr04:18427410..18427434 (25 bp)
ACTACACTGACTTCATCCAACAAAG
LOC_Os04g31130
OsAffx.26265.1.S1_at--340--6451Chr04:18427368..18427392 (25 bp)
GATAAGGCATACTGTCACGCCCAGA
LOC_Os04g31130
Target Sequence 
TCCGCATCCTCTGACGTCGAGGAAGCCCGTGGCAACAACGGGGTTGGGGGTAGATGGGAGGGCGGCGAGCTCGAGCGCCA
CTGTGACCAAGGGATCAAAACACGTGTATACGGTAGGCTCATGGCTTATGATACACGGTGGGTTCAAGAACTCCCATCTG
TCTTATGGGCCATACGCACTACACTGACTTCATCCAACAAAGAGATTGTCATGGTTACGGATAAGGCATACTGTCACGCC
CAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis