Browse Element(s) Details


OsAffx.26266.1.S1_at

Description tigr:9632.m02963
TID=OsAffx.26266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3117011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein
LOC_Os04g31150OsAffx.14063.1.S1_at11/114+18432518..18432968hypothetical protein
LOC_Os04g31160OsAffx.14064.1.S1_at10/114+18441403..18445020hypothetical protein
LOC_Os04g31170OsAffx.26266.1.S1_at11/114+18450202..18455962expressed protein
LOC_Os04g31180OsAffx.29169.1.S1_at7/114+18467302..18471613retrotransposon protein, putative, unclassified
LOC_Os04g31180OsAffx.29169.3.S1_at4/114+18467302..18471613retrotransposon protein, putative, unclassified
LOC_Os04g31190Os.27352.1.S1_at10/114+18472087..18482536Dynamin-related protein 3A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26266.1.S1_at--939--4951Chr04:18455851..18455875 (25 bp)
GCATAGCCCCGATGAGTGATTCTGA
LOC_Os04g31170
OsAffx.26266.1.S1_at--995--5691Chr04:18455811..18455835 (25 bp)
GACTCTGACAGACAATCCTTTCGTA
LOC_Os04g31170
OsAffx.26266.1.S1_at--550--2451Chr04:18455758..18455782 (25 bp)
AAAATACATCTGCTATGACCCTTCC
LOC_Os04g31170
OsAffx.26266.1.S1_at--10--10651Chr04:18455737..18455761 (25 bp)
TTCCGCTTGGCAATCAACCACTAAA
LOC_Os04g31170
OsAffx.26266.1.S1_at--983--2991Chr04:18455714..18455738 (25 bp)
AATGTTGTGCCTTTGAGTGCCATTC
LOC_Os04g31170
OsAffx.26266.1.S1_at--867--1131Chr04:18455699..18455723 (25 bp)
AGTGCCATTCCATTCAGTCAAGTGC
LOC_Os04g31170
OsAffx.26266.1.S1_at--106--5291Chr04:18455583..18455607 (25 bp)
GAAGGTTTCGATTTCTATTAGGGCT
LOC_Os04g31170
OsAffx.26266.1.S1_at--950--2331Chr04:18450842..18450866 (25 bp)
AAAGAACCCTGCTGCACGGGACAGA
LOC_Os04g31170
OsAffx.26266.1.S1_at--382--2751Chr04:18450268..18450292 (25 bp)
AAGACAGAAGCCCTCGAGTATTGGA
LOC_Os04g31170
OsAffx.26266.1.S1_at--710--10831Chr04:18450248..18450272 (25 bp)
TTGGAGATGACCCTATGATGCTGAA
LOC_Os04g31170
OsAffx.26266.1.S1_at--860--10111Chr04:18450235..18450259 (25 bp)
TATGATGCTGAAGCCAACTCTGCCT
LOC_Os04g31170
Target Sequence 
GCATAGCCCCGATGAGTGATTCTGAATATGACTCTGATGCGACTCTGACAGACAATCCTTTCGTAGGGATTGATGCAGAT
TCAGAGGATGAAGAAAATACATCTGCTATGACCCTTCCGCTTGGCAATCAACCACTAAATGTTGTGCCTTTGAGTGCCAT
TCCATTCAGTCAAGTGCAGGTTTTAAATCGGAAAGTGATTTCGGGTAAAGAAGAGGTTTTTGTTCCTCATTGGTTGAAGG
TACACAAGCTCTACAAAGATGGAGACTGGAAGGTTTCGATTTCTATTAGGGCTAATGGACACAAAGATTGGTTCTACAAT
CATCGGGAATACAAAAAAACATTCCGCTCCAAGCCTGAAGTTGAACTATTTATGGAAAGAACCCTGCTGCACGGGACAGA
TATATTCAACGGACGTAAACTACATAAGAAGAAGGCAATGGGTTCCTATGGTGAAGGCAGTGGTGGAAGTACATCTTCCA
TGGGAGAGAAAAAGAATACCAATACTAAAAGACAGAAGCCCTCGAGTATTGGAGATGACCCTATGATGCTGAAGCCAACT
CTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis