Browse Element(s) Details


Os.27352.1.S1_at

Description gb:AK105435.1
DB_XREF= gi:32990644
TID=Os.27352.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F11, full insert sequence.
FL= gb:AK105435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3119010/11Dynamin-related protein 3A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31170OsAffx.26266.1.S1_at11/114+18450202..18455962expressed protein
LOC_Os04g31180OsAffx.29169.1.S1_at7/114+18467302..18471613retrotransposon protein, putative, unclassified
LOC_Os04g31180OsAffx.29169.3.S1_at4/114+18467302..18471613retrotransposon protein, putative, unclassified
LOC_Os04g31190Os.27352.1.S1_at10/114+18472087..18482536Dynamin-related protein 3A, putative, expressed
LOC_Os04g31200OsAffx.14065.1.S1_at9/114+18484783..18485961hypothetical protein
LOC_Os04g31210Os.5633.1.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31210Os.5633.2.S1_x_at11/114+18488545..18493689Sodium Bile acid symporter family protein, expressed
LOC_Os04g31220OsAffx.19542.3.S1_x_at10/114+18495808..18500030retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31230OsAffx.26267.1.S1_at11/114+18502172..18503090hypothetical protein
LOC_Os04g31240Os.10063.2.S1_at10/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os04g31240Os.27780.2.S1_a_at1/114+18503261..18507358esterase/lipase/thioesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0009658biological_processchloroplast organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
GO:0035091molecular_functionphosphoinositide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27352.1.S1_at--195--10071Chr04:18472631..18472652 (22 bp)
TAGGACGCTCGAGGAATTTTCCCTT
LOC_Os04g31190
Os.27352.1.S1_at--369--6191Chr04:18472621..18472645 (25 bp)
GAGGAATTTTCCCTTGAAGCTGAAA
LOC_Os04g31190
Os.27352.1.S1_at--930--2931Chr04:18472531..18472555 (25 bp)
AATGGCGACCCCAGCATCATTTACG
LOC_Os04g31190
Os.27352.1.S1_at--622--1271Chr04:18472466..18472490 (25 bp)
AGATCAACATGGGTCGGTAGCGTCA
LOC_Os04g31190
Os.27352.1.S1_at--493--7851Chr04:18472451..18472475 (25 bp)
GGTAGCGTCATATAGTTCGACTTCC
LOC_Os04g31190
Os.27352.1.S1_at--423--231Chr04:18472442..18472466 (25 bp)
ATATAGTTCGACTTCCTATCCAGAT
LOC_Os04g31190
Os.27352.1.S1_at--1149--3711Chr04:18472416..18472440 (25 bp)
CTAATGGTGGGCTTCTTTCCACTTG
LOC_Os04g31190
Os.27352.1.S1_at--322--8611Chr04:18472283..18472307 (25 bp)
TGGTGCCGCACCTTGATCTTGTAAT
LOC_Os04g31190
Os.27352.1.S1_at--380--6431Chr04:18472269..18472293 (25 bp)
GATCTTGTAATCTAGCAGTTGCACT
LOC_Os04g31190
Os.27352.1.S1_at--375--4551Chr04:18472224..18472248 (25 bp)
GCCCAAGTACATTCATAGCCAACAG
LOC_Os04g31190
Os.27352.1.S1_at--943--9911Chr04:18472067..18472092 (25 bp)
TACTGCACCATAATGGACTCTCTAG
NONE
Target Sequence 
TAGGACGCTCGAGGAATTTTCCCTTGAAGCTGAAAAGGTTGAGAAGGGATANAGCCCTGCTGAATATGCTACTGGCCTGC
CAAAAATCCATGGTNTCAGCAATGGCGACCCCAGCATCATTTACGCATCCTCGCCTAACCACAATCGAAAGAAAGCATCT
CACGAAGATCAACATGGGTCGGTAGCGTCATATAGTTCGACTTCCTATCCAGATGCTAATGGTGGGCTTCTTTCCACTTG
ATCTTGATCAATTTCTCCTATCATTTTCAAGTGACNTGCTTCAGTTTTGTCCTGTAAATTCNATTTTTTGTTAGTGGGCT
ATTTTTTTCTGCAACTGGCAGNTATTTNTGGTGCCGCACCTTGATCTTGTAATCTAGCAGTTGCACTGAAATAGCAGGAC
TACAGGAGCCCAAGTACATTCATAGCCAACAGGGGCAATGGAATGGTGGCTGTGTAGATTAACAATGTAACTAGCCCCTT
ATATCATTTTGCCTTTTTTGTACTTNTGANAAGCCAGANCGGGAACNGCATATTACGAATAACTNGCAATCACAAAGNTA
NTTTACTGCACCATAATGGACTCTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis