Browse Element(s) Details


Os.27780.2.S1_a_at

Description gb:AK100756.1
DB_XREF= gi:32985965
TID=Os.27780.2
CNT=40
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0062C05.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118O21, full insert sequence.
FL= gb:AK100756.1 gb:AK064891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3626011/11expressed protein
LOC_Os04g312401/11esterase/lipase/thioesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36210OsAffx.7986.1.S1_at10/1110+19026685..19033558Valyl-tRNA synthetase, putative
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36250Os.46528.1.S1_at11/1110+19044511..19049905TPR Domain containing protein, expressed
LOC_Os10g36260Os.27780.2.S2_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.27780.2.S1_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.47621.1.S1_x_at1/1110+19050159..19052425expressed protein
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27780.2.S1_a_at--135--9231Chr10:19050749..19050773 (25 bp)
TCCTCCAAGTTACCAGGTACCAGGT
LOC_Os10g36260
Os.27780.2.S1_a_at--1006--6891Chr10:19050772..19050796 (25 bp)
GTATCACGGATACCAGGTACAAGGT
LOC_Os10g36260
Os.27780.2.S1_a_at--989--6891Chr10:19050802..19050826 (25 bp)
GTATCATGGTACCAGATACCAGGTA
LOC_Os10g36260
Os.27780.2.S1_a_at--589--9971Chr10:19050825..19050849 (25 bp)
TACCAGCCGGTACCAGATTTCAGGT
LOC_Os10g36260
Os.27780.2.S1_a_at--1121--1691Chr10:19050878..19050902 (25 bp)
ACCAAGCACCAGGTACCAACTGATA
LOC_Os10g36260
Os.27780.2.S1_a_at--1026--9732Chr10:19050891..19050915 (25 bp)
TACCAACTGATACCCAAGGTACTAG
LOC_Os10g36260
Os.27780.2.S1_a_at--896--352Chr10:19050918..19050942 (25 bp)
ATCAAGATGGAGTGCACGTGGAAGC
LOC_Os10g36260
Os.27780.2.S1_a_at--251--5951Chr10:19050949..19050973 (25 bp)
GAGTCACTTAAATTATCCCGTTACA
LOC_Os10g36260
Os.27780.2.S1_a_at--814--7653Chr10:19050976..19051000 (25 bp)
GGGATCCCGTTTTGTAGCCGCTCTC
LOC_Os10g36260
Os.27780.2.S1_a_at--488--6971Chr10:19050989..19051013 (25 bp)
GTAGCCGCTCTCATAAATATATTAT
LOC_Os10g36260
Os.27780.2.S1_a_at--761--1151Chr10:19051024..19051048 (25 bp)
AGTCTCTTATAGTTGGATTACCCAC
LOC_Os10g36260
Target Sequence 
TCCTCCAAGTTACCAGGTACCAGGTATCACGGATACCAGGTACAAGGTATTAGGTATCATGGTACCAGATACCAGGTACC
AGCCGGTACCAGATTTCAGGTATCAAAGGTATCAGTCGGTACCAAAGGTACCAAGCACCAGGTACCAACTGATACCCAAG
GTACTAGGTATCAAGATGGAGTGCACGTGGAAGCGGAGAGGAGTCACTTAAATTATCCCGTTACAACGGGATCCCGTTTT
GTAGCCGCTCTCATAAATATATTATAATTATAACCAGTCTCTTATAGTTGGATTACCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27780.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis