Browse Element(s) Details


Os.46510.1.S1_at

Description gb:AK069829.1
DB_XREF= gi:32979853
TID=Os.46510.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistant protein (OSJNBa0062C05.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028J10, full insert sequence.
FL= gb:AK069829.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3627011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36250Os.46528.1.S1_at11/1110+19044511..19049905TPR Domain containing protein, expressed
LOC_Os10g36260Os.27780.2.S2_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.27780.2.S1_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.47621.1.S1_x_at1/1110+19050159..19052425expressed protein
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein
LOC_Os10g36310OsAffx.18532.1.S1_at11/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36310OsAffx.20208.1.A1_x_at1/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36320NANA10+19080010..19080805hypothetical protein
LOC_Os10g36340OsAffx.18534.1.S1_at11/1110+19083661..19084407expressed protein
LOC_Os10g36350Os.27975.1.A1_at11/1110+19085952..19089076MSP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46510.1.S1_at--941--4451Chr10:19066854..19066878 (25 bp)
GCCTCTTTTGTTTGATTCCGTAACA
LOC_Os10g36270
Os.46510.1.S1_at--221--7071Chr10:19066889..19066913 (25 bp)
GTAAGTTAAGCCTAGTGTGCCTCAA
LOC_Os10g36270
Os.46510.1.S1_at--324--1111Chr10:19066902..19066926 (25 bp)
AGTGTGCCTCAAATGTCCTACATGA
LOC_Os10g36270
Os.46510.1.S1_at--294--2991Chr10:19066913..19066937 (25 bp)
AATGTCCTACATGATCTTGTTTGTG
LOC_Os10g36270
Os.46510.1.S1_at--55--8071Chr10:19066937..19066961 (25 bp)
GGAGAAATCATCTTTCTTCTGTAAT
LOC_Os10g36270
Os.46510.1.S1_at--891--9811Chr10:19066985..19067009 (25 bp)
TAACTTGGATAAACGTGCCAGCAAA
LOC_Os10g36270
Os.46510.1.S1_at--1136--8171Chr10:19067027..19067051 (25 bp)
GGAACCAAAATGACCCAGTATGACA
LOC_Os10g36270
Os.46510.1.S1_at--884--6911Chr10:19067044..19067068 (25 bp)
GTATGACATGGTATCTTTCTGTAAG
LOC_Os10g36270
Os.46510.1.S1_at--750--1391Chr10:19067067..19067091 (25 bp)
AGACATCCTTAAACCTTGTGTTTTG
LOC_Os10g36270
Os.46510.1.S1_at--940--5471Chr10:19067094..19067118 (25 bp)
GAACTTTATCATTTGCACCGAACCT
LOC_Os10g36270
Os.46510.1.S1_at--263--5091Chr10:19067108..19067132 (25 bp)
GCACCGAACCTTTTACAAGCATGTC
LOC_Os10g36270
Target Sequence 
GCCTCTTTTGTTTGATTCCGTAACAGTTTCAGAATGTAAGTTAAGCCTAGTGTGCCTCAAATGTCCTACATGATCTTGTT
TGTGGAGAAATCATCTTTCTTCTGTAATGTAAAGTACTGTTTCATATGTATTAACTTGGATAAACGTGCCAGCAAAAGCA
CAATGCCAGAATGGGAACCAAAATGACCCAGTATGACATGGTATCTTTCTGTAAGACATCCTTAAACCTTGTGTTTTGTT
GAACTTTATCATTTGCACCGAACCTTTTACAAGCATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis