Browse Element(s) Details


Os.46528.1.S1_at

Description gb:AK067969.1
DB_XREF= gi:32977987
TID=Os.46528.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative TPR (tetratricopeptide repeat) domain containing protein (OSJNBa0062C05.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122F06, full insert sequence.
FL= gb:AK067969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3625011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36190OsAffx.6884.1.S1_at11/1110+19020553..19022076pentatricopeptide, putative
LOC_Os10g36200Os.46151.1.S1_at11/1110+19023386..19024471heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os10g36210OsAffx.7986.1.S1_at10/1110+19026685..19033558Valyl-tRNA synthetase, putative
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36250Os.46528.1.S1_at11/1110+19044511..19049905TPR Domain containing protein, expressed
LOC_Os10g36260Os.27780.2.S2_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.27780.2.S1_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.47621.1.S1_x_at1/1110+19050159..19052425expressed protein
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46528.1.S1_at--5--3311Chr10:19045205..19045229 (25 bp)
CACAATTGCTGAGGCCTTTGCTAAG
LOC_Os10g36250
Os.46528.1.S1_at--849--7351Chr10:19045024..19045173 (25 bp)
GTGAAGCATCCATCAAGATTCTTGA
LOC_Os10g36250
Os.46528.1.S1_at--286--111Chr10:19045007..19045031 (25 bp)
ATTCTTGAGAAGCTTTACCACCCCA
LOC_Os10g36250
Os.46528.1.S1_at--820--9611Chr10:19044973..19044997 (25 bp)
TCATCGCGCACGAGTTGATCAAGCT
LOC_Os10g36250
Os.46528.1.S1_at--615--7171Chr10:19044947..19044971 (25 bp)
GTCTCCATCGAGCTTTCCATGGGAG
LOC_Os10g36250
Os.46528.1.S1_at--137--91Chr10:19044900..19044924 (25 bp)
ATTCGCCCGGGCAGATGCGATATTC
LOC_Os10g36250
Os.46528.1.S1_at--541--6511Chr10:19044882..19044906 (25 bp)
GATATTCTCGCTGTATTATGGGCCT
LOC_Os10g36250
Os.46528.1.S1_at--323--10711Chr10:19044842..19044866 (25 bp)
TTGCCCTACGTTGATGTGCTCAGAA
LOC_Os10g36250
Os.46528.1.S1_at--226--6791Chr10:19044704..19044728 (25 bp)
GTTAGACCCATTACGTTACAGAAAT
LOC_Os10g36250
Os.46528.1.S1_at--824--4311Chr10:19044650..19044674 (25 bp)
CCATCTACTACATTACAGTCTTGCC
LOC_Os10g36250
Os.46528.1.S1_at--275--3451Chr10:19044635..19044659 (25 bp)
CAGTCTTGCCCCTGTGTTTTATGAA
LOC_Os10g36250
Target Sequence 
CACAATTGCTGAGGCCTTTGCTAAGGTAGGAGATCAAGAACAAGCAAGAAAACACTGTGAAGCATCCATCAAGATTCTTG
AGAAGCTTTACCACCCCAGGCACATCATCATCGCGCACGAGTTGATCAAGCTCGTCTCCATCGAGCTTTCCATGGGAGAT
GGCGCAAGCGCGGCTGCTGCATTCGCCCGGGCAGATGCGATATTCTCGCTGTATTATGGGCCTGATGTAGAGAGGATTTT
GCCCTACGTTGATGTGCTCAGAAGAACTGTCAGTGAACGGTCTATNNNNNNNTGNTNNATGTTGACAATCTTACAGTATG
TGTATCAGTACATGCTGTTGTATCAGCAATTAGTAGACAAATCTAGAAAAAGAGATCAGATTAGTTAGACCCATTACGTT
ACAGAAATCTAGAAAAAATAGAGCATATTAGTTAAACCCATCTACTACATTACAGTCTTGCCCCTGTGTTTTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis