Browse Element(s) Details


Os.46151.1.S1_at

Description gb:AK120420.1
DB_XREF= gi:37990043
TID=Os.46151.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0062C05.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094M15, full insert sequence.
FL= gb:AK120420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3620011/11heavy-metal-associated domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36160Os.6845.1.S1_at11/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36160Os.46576.2.S1_x_at1/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36170Os.46576.2.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36170Os.46576.1.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36180Os.46582.1.S1_at11/1110+19016726..19018655expressed protein
LOC_Os10g36180Os.46582.2.S1_x_at6/1110+19016726..19018655expressed protein
LOC_Os10g36190OsAffx.6884.1.S1_at11/1110+19020553..19022076pentatricopeptide, putative
LOC_Os10g36200Os.46151.1.S1_at11/1110+19023386..19024471heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os10g36210OsAffx.7986.1.S1_at10/1110+19026685..19033558Valyl-tRNA synthetase, putative
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36250Os.46528.1.S1_at11/1110+19044511..19049905TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46151.1.S1_at--446--3591Chr10:19024391..19024415 (25 bp)
CATTCACAGCTTCCAGATGGCTCAG
LOC_Os10g36200
Os.46151.1.S1_at--805--3611Chr10:19024350..19024374 (25 bp)
CTTGTTTATGGTTCAATTCCCTGAT
LOC_Os10g36200
Os.46151.1.S1_at--950--71Chr10:19024335..19024359 (25 bp)
ATTCCCTGATTCCTTCGGCGGTTCA
LOC_Os10g36200
Os.46151.1.S1_at--307--9431Chr10:19024305..19024329 (25 bp)
TCGTGTCGTCGGATGATAATTCTCA
LOC_Os10g36200
Os.46151.1.S1_at--609--8891Chr10:19024266..19024290 (25 bp)
TGAGGGTTCCAACCATGACCGACGA
LOC_Os10g36200
Os.46151.1.S1_at--368--5051Chr10:19024232..19024256 (25 bp)
GCAGAAAGCCATTGAAGCCGTTGCA
LOC_Os10g36200
Os.46151.1.S1_at--919--7851Chr10:19023755..19023779 (25 bp)
GGTATCGATTCCATAGCTGCAGATT
LOC_Os10g36200
Os.46151.1.S1_at--119--3611Chr10:19023501..19023525 (25 bp)
CATTGCATAGTGTCTCTCCCATCTG
LOC_Os10g36200
Os.46151.1.S1_at--732--7351Chr10:19023473..19023497 (25 bp)
GTGAAACAGCCAATACCTTGGACTT
LOC_Os10g36200
Os.46151.1.S1_at--889--9971Chr10:19023460..19023484 (25 bp)
TACCTTGGACTTTTGATCGATGTTT
LOC_Os10g36200
Os.46151.1.S1_at--787--5591Chr10:19023430..19023454 (25 bp)
GAAATTACTCTGTACCATAATACTG
LOC_Os10g36200
Target Sequence 
CATTCACAGCTTCCAGATGGCTCAGNTAAGCAAGTNCAACTCTTGTTTATGGTTCAATTCCCTGATTCCTTCGGCGGTTC
ACGCCTTCGTGTCGTCGGATGATAATTCTCAGCAGAAGGTGGTGCTGAGGGTTCCAACCATGACCGACGACAAGATTAAG
CAGAAAGCCATTGAAGCCGTTGCAGACNATCTACGGTATCGATTCCATAGCTGCAGATTTNAAGGACAATAAGATGACCA
TCATCGGTGAAATGNACACNAGTGGCNAATTGCNAAAGAANGTTNAAAGAAGATTGGGAAGATTGACNTTGTGTCTGTTG
GACCTGCNAAAAGAANGAGAANGAAGGAAGAAAAGAAAGAGGAGAAGAAAGAAGAGAAGAAGGAAGAGAAGAAGGAGGAG
AAGAAAGAGGAAAAGAAAGAAGAGAAGAAATGATAAAATTATGAAATATATAACACCATTGCATAGTGTCTCTCCCATCT
GCAAGTGAAACAGCCAATACCTTGGACTTTTGATCGATGTTTTATGTGAAATTACTCTGTACCATAATACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis