Browse Element(s) Details


Os.6845.1.S1_at

Description gb:AK062529.1
DB_XREF= gi:32972547
TID=Os.6845.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipid transfer protein (OSJNBa0062C05.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-E01, full insert sequence.
FL= gb:AK062529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3616011/11nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g361101/11Nonspecific lipid-transfer protein 2G, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36110Os.19967.1.S1_at4/1110+18977838..18978410Nonspecific lipid-transfer protein 2G, putative, expressed
LOC_Os10g36110Os.6845.1.S1_at1/1110+18977838..18978410Nonspecific lipid-transfer protein 2G, putative, expressed
LOC_Os10g36130OsAffx.18530.1.S1_at10/1110+18981593..18982543hypothetical protein
LOC_Os10g36134NANA10+18984726..18986038retrotransposon protein, putative, unclassified
LOC_Os10g36140Os.31312.5.S1_x_at4/1110+18987726..18991023retrotransposon protein, putative, unclassified
LOC_Os10g36140Os.31312.2.S1_x_at4/1110+18987726..18991023retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_x_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36160Os.6845.1.S1_at11/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36160Os.46576.2.S1_x_at1/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36170Os.46576.2.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36170Os.46576.1.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36180Os.46582.1.S1_at11/1110+19016726..19018655expressed protein
LOC_Os10g36180Os.46582.2.S1_x_at6/1110+19016726..19018655expressed protein
LOC_Os10g36190OsAffx.6884.1.S1_at11/1110+19020553..19022076pentatricopeptide, putative
LOC_Os10g36200Os.46151.1.S1_at11/1110+19023386..19024471heavy-metal-associated domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6845.1.S1_at--226--1111Chr10:19001194..19001218 (25 bp)
AGTGTGACCCTGAGCAGCTATCGGC
LOC_Os10g36160
Os.6845.1.S1_at--242--1571Chr10:19001179..19001203 (25 bp)
AGCTATCGGCGTGCGTGAGCCCGAT
LOC_Os10g36160
Os.6845.1.S1_at--919--7371Chr10:19001165..19001189 (25 bp)
GTGAGCCCGATCTTCTACGGGACGG
LOC_Os10g36160
Os.6845.1.S1_at--29--5751Chr10:19001145..19001169 (25 bp)
GACGGCGCCATCAGAGTCGTGCTGC
LOC_Os10g36160
Os.6845.1.S1_at--889--4471Chr10:19000967..19000991 (25 bp)
GCCGGCCATGATGCGTACGTGGCAT
LOC_Os10g36160
Os.6845.1.S1_at--165--9931Chr10:19000952..19000976 (25 bp)
TACGTGGCATATATACGCGTGGTGT
LOC_Os10g36160
Os.6845.1.S1_at--739--311Chr10:19000940..19000964 (25 bp)
ATACGCGTGGTGTGTACGTGCGCTT
LOC_Os10g36160
Os.6845.1.S1_at--543--5191Chr10:19000895..19000919 (25 bp)
GAATTAATAATTATCCAGTACGCGA
LOC_Os10g36160
Os.6845.1.S1_at--340--3455Chr10:18974456..18974762 (25 bp)
CAGTACGCGATGTTTGATCGATCGA
NONE
Os.6845.1.S1_at--800--5471Chr10:19000822..19000846 (25 bp)
GAACTCTGAATTTCATCTTGTGTTA
LOC_Os10g36160
Os.6845.1.S1_at--213--6491Chr10:19000787..19000811 (25 bp)
GATAGCTGTGTGTACATTCGTTTTG
LOC_Os10g36160
Target Sequence 
AGTGTGACCCTGAGCAGCTATCGGCGTGCGTGAGCCCGATCTTCTACGGGACGGCGCCATCAGAGTCGTGCTGCTCCAAC
CTACGCGCACAGCAGAAGGAGGGGTGCCTCTGCCAGTACGCGAAAGACCCGACGTACGCGTCCTACGTCAACAACACCAA
CGCACGCAAGACCATCGCCGCCTGCGGCATCCCCATTCCCAGCTGCTAGGCTCGATCTCCCGCCGCCGCCGGCCATGATG
CGTACGTGGCATATATACGCGTGGTGTGTACGTGCGCTTGAAGAAAAGGGCGTGAGTTTGAATTAATAATTATCCAGTAC
GCGATGTTTGATCGATCGATGATGTGCCTTTTTTTTTTGGTATTTGAAGTTTGAACTCTGAATTTCATCTTGTGTTAATT
GGAGTATGATAGCTGTGTGTACATTCGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis