Browse Element(s) Details


OsAffx.18530.1.S1_at

Description tigr:9638.m03211
TID=OsAffx.18530.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3613010/11hypothetical protein
LOC_Os10g016601/11Transferase family protein, expressed
LOC_Os09g231601/11Annexin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36070Os.46576.2.S1_x_at11/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36070Os.46576.1.S1_x_at2/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.2.S1_x_at11/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.1.S1_x_at3/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36100Os.46576.2.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36110Os.19967.1.S1_at4/1110+18977838..18978410Nonspecific lipid-transfer protein 2G, putative, expressed
LOC_Os10g36110Os.6845.1.S1_at1/1110+18977838..18978410Nonspecific lipid-transfer protein 2G, putative, expressed
LOC_Os10g36130OsAffx.18530.1.S1_at10/1110+18981593..18982543hypothetical protein
LOC_Os10g36134NANA10+18984726..18986038retrotransposon protein, putative, unclassified
LOC_Os10g36140Os.31312.5.S1_x_at4/1110+18987726..18991023retrotransposon protein, putative, unclassified
LOC_Os10g36140Os.31312.2.S1_x_at4/1110+18987726..18991023retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_x_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36160Os.6845.1.S1_at11/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36160Os.46576.2.S1_x_at1/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36170Os.46576.2.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36170Os.46576.1.S1_x_at1/1110+19005650..19005925Nonspecific lipid-transfer protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18530.1.S1_at--862--2911Chr10:18982485..18982509 (25 bp)
AAGGAGGTGGCGAACCCGCAGCCAC
LOC_Os10g36130
OsAffx.18530.1.S1_at--2--3731Chr10:18982457..18982481 (25 bp)
CTACTCACCTTCTCGATTTAGGTTT
LOC_Os10g36130
OsAffx.18530.1.S1_at--524--6831Chr10:18981962..18982460 (25 bp)
GTTTAATTATCATGCGGGTCCCACA
LOC_Os10g36130
OsAffx.18530.1.S1_at--54--171NONE
ATTATCATGCGGGTCCCACATTAGT
NONE
OsAffx.18530.1.S1_at--805--14116Chr09:13709161..13709185 (25 bp)
AGAAATATACCGTCGGTCTCGCACA
LOC_Os09g23160
OsAffx.18530.1.S1_at--779--7811Chr10:18981682..18981706 (25 bp)
GGTCTCGCACAACTGTTGCGCAAAA
LOC_Os10g36130
OsAffx.18530.1.S1_at--322--1971Chr10:18981671..18981695 (25 bp)
ACTGTTGCGCAAAAATGATGTGGGA
LOC_Os10g36130
OsAffx.18530.1.S1_at--1119--2432Chr11:14006601..14006906 (25 bp)
AAAATGATGTGGGAATGACGTCGTG
NONE
OsAffx.18530.1.S1_at--1036--5253Chr06:6626808..6626829 (22 bp)
GAATGACGTCGTGGGCGGTATCGCG
NONE
OsAffx.18530.1.S1_at--1148--4671Chr10:18981634..18981658 (25 bp)
GCGGTATCGCGTAACGGAATAGCGA
LOC_Os10g36130
OsAffx.18530.1.S1_at--1017--9311Chr10:18981623..18981647 (25 bp)
TAACGGAATAGCGAGACCGAACGGT
LOC_Os10g36130
Target Sequence 
AAGGAGGTGGCGAACCCGCAGCCACCGGCTACTCACCTTCTCGATTTAGGTTTAATTATCATGCGGGTCCCACATTAGTA
GACATAAAATTTTTATGGGACAAAGATTTAAAGAAATATACCGTCGGTCTCGCACAACTGTTGCGCAAAAATGATGTGGG
AATGACGTCGTGGGCGGTATCGCGTAACGGAATAGCGAGACCGAACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis